RetrogeneDB ID: | retro_vpac_321 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_778:402284..403046(-) | ||
Located in intron of: | ENSVPAG00000010087 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM192A | ||
Ensembl ID: | ENSVPAG00000005973 | ||
Aliases: | None | ||
Description: | family with sequence similarity 192, member A [Source:HGNC Symbol;Acc:29856] |
Percent Identity: | 94.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDGGDDGNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYE |
MDGGDDGNLVIKKRFVSEAELDER.KRRQEEWEKVRKPEDPEECP.EVYDP.SLYE.LQEQKDRKQQEYE | |
Retrocopy | MDGGDDGNLVIKKRFVSEAELDERCKRRQEEWEKVRKPEDPEECPGEVYDPWSLYEKLQEQKDRKQQEYE |
Parental | EQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRSNLNKVGISPENKKEVEKKVTVKP |
EQFKFKN.VRGLDEDETNFLDEVS.QQEL.EKQ.REEELKELKEYRSNL.KVGISPENKKEVEKKVTVKP | |
Retrocopy | EQFKFKNTVRGLDEDETNFLDEVSWQQELTEKQQREEELKELKEYRSNLKKVGISPENKKEVEKKVTVKP |
Parental | IETKNKFSQAKLLAGAVKHKSSESGNSVKRLKSDPDPDDKNQEAPSCVSLGSTSLSGPSIHCPSAAVCIG |
.ETK.KFSQAKLLAGAVK.KSSESGNSVKRLKSDPDPDDKNQEAP.CVS.GSTSLSGPSIHCPSAAVCIG | |
Retrocopy | KETKYKFSQAKLLAGAVKPKSSESGNSVKRLKSDPDPDDKNQEAPPCVSPGSTSLSGPSIHCPSAAVCIG |
Parental | ILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP |
ILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLE.P | |
Retrocopy | ILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002242 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000001392 | 1 retrocopy | |
Equus caballus | ENSECAG00000009324 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014379 | 1 retrocopy | |
Homo sapiens | ENSG00000172775 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003938 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013492 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031774 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002716 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000006909 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000007382 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008148 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013300 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012791 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005973 | 1 retrocopy |
retro_vpac_321 ,
|