RetrogeneDB ID: | retro_eeur_135 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_8480:74007..74292(-) | ||
Located in intron of: | ENSEEUG00000003846 | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000003944 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP1B | ||
Ensembl ID: | ENSEEUG00000013920 | ||
Aliases: | None | ||
Description: | FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712] |
Percent Identity: | 74.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAY |
R.FPK.GQTCVVHYTGML..GK.FDSS.DRNKPFKF..GKQEVI.G.E.G.AQMS.GQRAKL...PD.AY | |
Retrocopy | RIFPKRGQTCVVHYTGMLEDGKEFDSSWDRNKPFKFMLGKQEVIRGWEGGVAQMSVGQRAKLIISPDYAY |
Parental | GATGHPGVIPPNATLIFDVELLNLE |
G.TGHPG.IP.NATL.FDV..L.LE | |
Retrocopy | GSTGHPGIIPRNATLVFDVKRLKLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .35 RPM | 11 .44 RPM |
SRP017611_kidney | 2 .81 RPM | 0 .19 RPM |
SRP017611_liver | 2 .41 RPM | 0 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002797 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013920 | 2 retrocopies |
retro_eeur_135 , retro_eeur_514,
|
Echinops telfairi | ENSETEG00000018990 | 2 retrocopies | |
Homo sapiens | ENSG00000119782 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010689 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001530 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011708 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013808 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012282 | 1 retrocopy |