RetrogeneDB ID: | retro_etel_186 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_3241:51538..51822(+) | ||
Located in intron of: | ENSETEG00000006769 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP1B | ||
Ensembl ID: | ENSETEG00000018990 | ||
Aliases: | None | ||
Description: | FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712] |
Percent Identity: | 77.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RTFPKKGQTCVVHYTG-ILQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVA |
RTFPK.GQTC.VHYTG..L..GKKFDSSRDRNKPFKF..GKQEVI.G.EEG..QMS.GQRAKLT..PD.A | |
Retrocopy | RTFPKRGQTCMVHYTG<MLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVTQMSVGQRAKLTISPDYA |
Parental | YGTTGHPGVIPPNATLIFDVELLNLE |
YG.TGHPG.I.PNATL.FD.ELL.LE | |
Retrocopy | YGVTGHPGIITPNATLVFDMELLKLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002797 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013920 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000003358 | 8 retrocopies | |
Echinops telfairi | ENSETEG00000007454 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018432 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018990 | 2 retrocopies |
retro_etel_186 , retro_etel_2071,
|
Homo sapiens | ENSG00000119782 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010689 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001530 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011708 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013808 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012282 | 1 retrocopy |