RetrogeneDB ID: | retro_eeur_514 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_333298:4315..4597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP1B | ||
Ensembl ID: | ENSEEUG00000013920 | ||
Aliases: | None | ||
Description: | FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712] |
Percent Identity: | 75.53 % |
Parental protein coverage: | 98.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLTCTPDVAYG |
TF....QTCVVHY.GML...KKFDSS.DRNKPFKF..GKQEVI.G.EEG.AQMS.GQRAKL...PD.AYG | |
Retrocopy | TFQTHSQTCVVHYMGMLEDRKKFDSSWDRNKPFKFMLGKQEVIRGWEEGVAQMSMGQRAKLIIFPDYAYG |
Parental | ATGHPGVIPPNATLIFDVELLNLE |
.TGHPG..PPNATLIFDVELL.LE | |
Retrocopy | STGHPGITPPNATLIFDVELLKLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 2 .42 RPM | 11 .44 RPM |
SRP017611_kidney | 0 .94 RPM | 0 .19 RPM |
SRP017611_liver | 0 .32 RPM | 0 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002797 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000006859 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000013920 | 2 retrocopies |
retro_eeur_135, retro_eeur_514 ,
|
Echinops telfairi | ENSETEG00000018990 | 2 retrocopies | |
Homo sapiens | ENSG00000119782 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010689 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001530 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011708 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013808 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012282 | 1 retrocopy |