RetrogeneDB ID: | retro_eeur_210 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_209234:2562..3026(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SET | ||
Ensembl ID: | ENSEEUG00000006238 | ||
Aliases: | None | ||
Description: | SET nuclear oncogene [Source:HGNC Symbol;Acc:10760] |
Percent Identity: | 84.81 % |
Parental protein coverage: | 55.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SALLGEEDEEALHYLT-RVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSK-STEIKW |
S.LLGEEDEEALHYLT.RVEVTEFED.KSG.RIDFYF.ENPYFENKVLSKEF.LNESGDPS...STEIKW | |
Retrocopy | STLLGEEDEEALHYLT<RVEVTEFEDSKSGNRIDFYFVENPYFENKVLSKEFYLNESGDPSFEGSTEIKW |
Parental | KSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEG |
KSGKDL.K.SSQTQN...RKRQHEEPESFFTWFTDH..A.A.ELGEVIKD.IWPN.LQYYLVPDMDDE.G | |
Retrocopy | KSGKDLIKCSSQTQNQTNRKRQHEEPESFFTWFTDHFGAVASELGEVIKDGIWPNTLQYYLVPDMDDE*G |
Parental | EGEEDDDDDEEEEGLEDI |
EGE..DDDDEEEEGLED. | |
Retrocopy | EGE--DDDDEEEEGLEDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 82 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .89 RPM |
SRP017611_liver | 0 .00 RPM | 21 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Erinaceus europaeus | ENSEEUG00000006238 | 11 retrocopies |
retro_eeur_152, retro_eeur_166, retro_eeur_173, retro_eeur_210 , retro_eeur_260, retro_eeur_287, retro_eeur_452, retro_eeur_659, retro_eeur_696, retro_eeur_700, retro_eeur_701,
|
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000008532 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Mus musculus | ENSMUSG00000054766 | 17 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies |