RetrogeneDB ID: | retro_mmul_362 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:28719120..28719825(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.192 | ||
Ensembl ID: | ENSMMUG00000008532 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.34 % |
Parental protein coverage: | 81.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAPKRQSPLLPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVE |
MAPK.QSPLLPQKKKPRPPPALGPEET.ASAGL.KKGEKEQQEAIEHI.EVQNEIDRLNE.ASEEILKVE | |
Retrocopy | MAPKCQSPLLPQKKKPRPPPALGPEETLASAGLLKKGEKEQQEAIEHIKEVQNEIDRLNE*ASEEILKVE |
Parental | QKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRIDFY |
QKY.K..QPFFQKRSELI.KIPNFWVTTFVNHPQVSAL.GEEDEEALHYLTRVEVTEFEDIKSGYR.DFY | |
Retrocopy | QKYTKHHQPFFQKRSELITKIPNFWVTTFVNHPQVSALPGEEDEEALHYLTRVEVTEFEDIKSGYRTDFY |
Parental | FDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHS |
FD.NPYFENKVLSKEFHL.ESGDPSSKST.IKWKSGKDLTKRSSQTQNKASRK.Q.EEPESFFTWFTDHS | |
Retrocopy | FDGNPYFENKVLSKEFHLKESGDPSSKSTKIKWKSGKDLTKRSSQTQNKASRKTQREEPESFFTWFTDHS |
Parental | DAGADELGEVIKDDIWPNPLQYYLV |
DAGA.ELGEVIKDDIWPNPLQ.YLV | |
Retrocopy | DAGANELGEVIKDDIWPNPLQNYLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 51 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .56 RPM | 47 .36 RPM |
SRP007412_cerebellum | 0 .39 RPM | 49 .21 RPM |
SRP007412_heart | 0 .18 RPM | 40 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .20 RPM |
SRP007412_liver | 0 .00 RPM | 11 .68 RPM |
SRP007412_testis | 0 .11 RPM | 20 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015686 | 7 retrocopies | |
Bos taurus | ENSBTAG00000020959 | 8 retrocopies | |
Canis familiaris | ENSCAFG00000032728 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000002802 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000006238 | 11 retrocopies | |
Felis catus | ENSFCAG00000005848 | 2 retrocopies | |
Homo sapiens | ENSG00000119335 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000014291 | 13 retrocopies | |
Macaca mulatta | ENSMMUG00000008532 | 11 retrocopies | |
Mustela putorius furo | ENSMPUG00000013069 | 10 retrocopies | |
Mus musculus | ENSMUSG00000054766 | 17 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017595 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007501 | 12 retrocopies | |
Otolemur garnettii | ENSOGAG00000007635 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019659 | 17 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000010546 | 6 retrocopies |