RetrogeneDB - Parental gene ENSBTAG00000020959 details

							
>ENSBTAG00000020959
GCAGAAAAAGAACAGCAAGAAGCAATTGAACATATTGATGAAGTACAAAATGAAATAGACAGACTTAATGAACAAGCCAG

TGAGGAGATTTTGAAAGTAGAACAGAAATATAACAAACTCCGCCAACCATTTTTTCAGAAGAGGTCAGAATTGATCGCCA

AAATCCCAAATTTTTGGGTAACAACATTTGTTAACCATCCACAAGTGTCTGCACTGCTTGGGGAGGAGGATGAAGAGGCG

CTGCATTATTTGACAAGAGTTGAAGTGACAGAATTTGAAGACATTAAATCAGGTTACAGAATAGATTTTTATTTTGATGA

AAACCCTTACTTCGAAAATAAAATTCTCTCCAAAGAATTTCATCTGAATGAGAGTGGTGATCCATCTTCAAAGTCCACTG

AAATCAAATGGAAATCTGGAAAGGATTTGACGAAACGATCAAGTCAAACACAGAATAAAGCCAGCAGGAAGAGACAGCAT

GAGGAACCAGAAAGCTTCTTCACCTGGTTTACTGATCATTCTGATGCAGGTGCAGATGAGTTAGGAGAGGTCATCAAAGA

TGATATTTGGCCAAATCCATTACAGTACTACTTGGTTCCTGACATGGATGATGAGGAAGGGGAAGGAGAAGAGGATGACG

ACGACGACGAAGAGGAAGAAGGATTGGAAGACATTGATGAAGAAGGGGATGAGGATGAAGGTGAAGAAGATGAAGATGAT

GATGAGGGGGAGGAAGGAGAGGAAGATGAAGGAGAAGATGACTAA

Library	Parental gene expression (RPM)
SRP017611_brain	47 .14 RPM
SRP017611_kidney	67 .87 RPM
SRP017611_liver	40 .47 RPM
ERP005899_muscle	123 .58 RPM
ERP005899_liver	33 .31 RPM
SRP030211_testis	94 .67 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000015686	ortholog_one2one	7 retrogenes	retro_amel_1093, retro_amel_1201, retro_amel_1459, retro_amel_1675, retro_amel_530, retro_amel_631, retro_amel_634,
Bos taurus	ENSBTAG00000031517	within_species_paralog	2 retrogenes	retro_btau_1721, retro_btau_667,
Canis familiaris	ENSCAFG00000032728	possible_ortholog	2 retrogenes	retro_cfam_47, retro_cfam_83,
Dasypus novemcinctus	ENSDNOG00000002802	possible_ortholog	3 retrogenes	retro_dnov_160, retro_dnov_1830, retro_dnov_464,
Equus caballus	ENSECAG00000009117	ortholog_one2one	4 retrogenes	retro_ecab_358, retro_ecab_417, retro_ecab_505, retro_ecab_675,
Erinaceus europaeus	ENSEEUG00000006238	possible_ortholog	11 retrogenes	retro_eeur_152, retro_eeur_166, retro_eeur_173, retro_eeur_210, retro_eeur_260, retro_eeur_287, retro_eeur_452, retro_eeur_659, retro_eeur_696, retro_eeur_700, retro_eeur_701,
Echinops telfairi	ENSETEG00000016746	possible_ortholog	15 retrogenes	retro_etel_1039, retro_etel_109, retro_etel_1123, retro_etel_1372, retro_etel_1649, retro_etel_1790, retro_etel_1872, retro_etel_1880, retro_etel_1930, retro_etel_1937, retro_etel_2110, retro_etel_2159, retro_etel_835, retro_etel_920, retro_etel_939,
Felis catus	ENSFCAG00000005848	possible_ortholog	2 retrogenes	retro_fcat_130, retro_fcat_89,
Homo sapiens	ENSG00000119335	possible_ortholog	14 retrogenes	retro_hsap_1336, retro_hsap_1389, retro_hsap_1847, retro_hsap_241, retro_hsap_269, retro_hsap_2719, retro_hsap_2721, retro_hsap_3075, retro_hsap_3088, retro_hsap_3326, retro_hsap_3358, retro_hsap_420, retro_hsap_4722, retro_hsap_806,
Microcebus murinus	ENSMICG00000017643	possible_ortholog	2 retrogenes	retro_mmur_1398, retro_mmur_775,
Myotis lucifugus	ENSMLUG00000014291	possible_ortholog	13 retrogenes	retro_mluc_1026, retro_mluc_1120, retro_mluc_1673, retro_mluc_1977, retro_mluc_2098, retro_mluc_2188, retro_mluc_2361, retro_mluc_2412, retro_mluc_2584, retro_mluc_419, retro_mluc_524, retro_mluc_855, retro_mluc_881,
Macaca mulatta	ENSMMUG00000008532	possible_ortholog	11 retrogenes	retro_mmul_1133, retro_mmul_1261, retro_mmul_1534, retro_mmul_2096, retro_mmul_2175, retro_mmul_2241, retro_mmul_2262, retro_mmul_2614, retro_mmul_362, retro_mmul_419, retro_mmul_569,
Mustela putorius furo	ENSMPUG00000013069	possible_ortholog	10 retrogenes	retro_mputfur_1330, retro_mputfur_1556, retro_mputfur_1581, retro_mputfur_1605, retro_mputfur_221, retro_mputfur_274, retro_mputfur_286, retro_mputfur_723, retro_mputfur_785, retro_mputfur_799,
Mus musculus	ENSMUSG00000054766	ortholog_one2many	17 retrogenes	retro_mmus_1366, retro_mmus_1435, retro_mmus_1671, retro_mmus_1743, retro_mmus_2329, retro_mmus_2448, retro_mmus_2484, retro_mmus_2664, retro_mmus_2665, retro_mmus_3015, retro_mmus_3290, retro_mmus_345, retro_mmus_3513, retro_mmus_517, retro_mmus_887, retro_mmus_929, retro_mmus_967,
Nomascus leucogenys	ENSNLEG00000017595	possible_ortholog	2 retrogenes	retro_nleu_108, retro_nleu_870,
Oryctolagus cuniculus	ENSOCUG00000007501	possible_ortholog	12 retrogenes	retro_ocun_1107, retro_ocun_1110, retro_ocun_1234, retro_ocun_1311, retro_ocun_1563, retro_ocun_276, retro_ocun_407, retro_ocun_421, retro_ocun_423, retro_ocun_476, retro_ocun_859, retro_ocun_923,
Otolemur garnettii	ENSOGAG00000007635	possible_ortholog	13 retrogenes	retro_ogar_115, retro_ogar_1370, retro_ogar_3084, retro_ogar_3186, retro_ogar_3195, retro_ogar_3289, retro_ogar_447, retro_ogar_465, retro_ogar_543, retro_ogar_565, retro_ogar_806, retro_ogar_899, retro_ogar_934,
Pongo abelii	ENSPPYG00000019659	possible_ortholog	17 retrogenes	retro_pabe_1076, retro_pabe_1110, retro_pabe_1150, retro_pabe_1218, retro_pabe_1452, retro_pabe_1717, retro_pabe_1771, retro_pabe_2549, retro_pabe_2557, retro_pabe_2740, retro_pabe_299, retro_pabe_3667, retro_pabe_400, retro_pabe_414, retro_pabe_470, retro_pabe_720, retro_pabe_838,
Pan troglodytes	ENSPTRG00000021436	possible_ortholog	16 retrogenes	retro_ptro_1232, retro_ptro_1836, retro_ptro_1838, retro_ptro_2073, retro_ptro_2085, retro_ptro_209, retro_ptro_2151, retro_ptro_2152, retro_ptro_225, retro_ptro_2283, retro_ptro_2965, retro_ptro_3140, retro_ptro_321, retro_ptro_561, retro_ptro_913, retro_ptro_953,
Pteropus vampyrus	ENSPVAG00000003437	possible_ortholog	2 retrogenes	retro_pvam_1198, retro_pvam_886,
Ictidomys tridecemlineatus	ENSSTOG00000010546	possible_ortholog	6 retrogenes	retro_itri_1204, retro_itri_1588, retro_itri_477, retro_itri_529, retro_itri_603, retro_itri_876,
Tursiops truncatus	ENSTTRG00000011605	possible_ortholog	7 retrogenes	retro_ttru_1433, retro_ttru_1600, retro_ttru_181, retro_ttru_1901, retro_ttru_537, retro_ttru_919, retro_ttru_931,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_btau_464	96.97	64.96	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_btau_469	71.24	88.58	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_btau_749	82.78	59.06	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_btau_955	79.56	53.54	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_btau_1179	99.13	90.55	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_btau_1490	82.96	87.40	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_btau_1519	83.33	91.73	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_btau_1556	86.58	57.09	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSBTAG00000020959 retrocopies

Parental gene:	BT.64623, ENSBTAG00000020959
Aliases:	None
Description:	protein SET [Source:RefSeq peptide;Acc:NP_001033653]
Organism:	*Cow (Bos taurus)*
Coordinates:	11:99223001..99226827(+)

Parental gene:

BT.64623, ENSBTAG00000020959