RetrogeneDB ID: | retro_mmus_1743 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 18:82414365..82414908(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Set | ||
Ensembl ID: | ENSMUSG00000054766 | ||
Aliases: | Set, 2610030F17Rik, 5730420M11Rik, AA407739, I-2PP2A, StF-IT-1, TAF-I | ||
Description: | SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267] |
Percent Identity: | 52.66 % |
Parental protein coverage: | 63.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | APKRQSAILPQPKKPRPAAAPKLEDKSASPGLPK-GEKEQQEAIEHIDEVQNEIDRLNEQASEEI-LKVE |
A.K.QS..L.Q.K...P..AP........P.L......E.QE..E..D..QNE.D......SEE..L..E | |
Retrocopy | AQK*QSVFLSQAKQ--PRLAPASKLVESHPFLTC*RDDE*QEMLEYSDDGQNETDEVKKHPSEET<LRRE |
Parental | QKYN-KLRQPFFQKRSELIAKIPNF-WVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKSGYRID |
QKY...L.QPF.QK.SEL.AKIPNF..VTTF..HP..SA.L.EE..EAL.YLTRV..TEFE..KSG.R.D | |
Retrocopy | QKYK<TLHQPFSQK-SELMAKIPNF<QVTTFADHPKESAPLEEENKEALQYLTRVHTTEFEAVKSGCRRD |
Parental | FYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQT |
.Y.DENP.FEN.VLSK.F.L.ES.D..S.STEIKW..G......S..T | |
Retrocopy | CYRDENPFFENEVLSKGFLLSESSDLHSMSTEIKWEPGENKALNSHRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 77 .17 RPM |
SRP007412_cerebellum | 0 .13 RPM | 74 .77 RPM |
SRP007412_heart | 0 .00 RPM | 47 .91 RPM |
SRP007412_kidney | 0 .02 RPM | 63 .41 RPM |
SRP007412_liver | 0 .00 RPM | 49 .26 RPM |
SRP007412_testis | 0 .00 RPM | 68 .47 RPM |