RetrogeneDB ID: | retro_eeur_460 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_312918:4794..5227(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000004975 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSEEUG00000010297 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 82.76 % |
Parental protein coverage: | 94.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIM |
.LVIPEKFQHILRVLNTNIDG..KIAFAITA.KGV..RYAHVV.RKAD.DLTKR.GELTED.VE.VITIM | |
Retrocopy | TLVIPEKFQHILRVLNTNIDGCQKIAFAITAVKGVRQRYAHVVVRKADTDLTKRTGELTEDKVECVITIM |
Parental | QNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHR-GLRHFWGLRVRGQHTKTTG |
QNP.QY.IP.WFLNRQK.VKDGKYSQVLANGLDNKL.EDLERLKKIRAHR.GLRHFWGL...GQHTK.T. | |
Retrocopy | QNPHQYDIPKWFLNRQKNVKDGKYSQVLANGLDNKLCEDLERLKKIRAHR>GLRHFWGLGIHGQHTKITE |
Parental | RRGRT |
RR... | |
Retrocopy | RRTKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 142 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 346 .38 RPM |
SRP017611_liver | 0 .00 RPM | 299 .53 RPM |