RetrogeneDB ID: | retro_dnov_1398 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_1957:60821..61105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSDNOG00000012084 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 58.25 % |
Parental protein coverage: | 65.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPD-WFLNRQKDVKDG-KYSQVLANGLDN |
..Y.HVVLRKADI.LTKRAGE...DEVE.VI.IMQN....K....WF.NR..DVK......Q.LA.GLDN | |
Retrocopy | QKYTHVVLRKADIYLTKRAGE---DEVEHVIAIMQNSCRSKMHT<WFWNRPRDVKGE<NIDQFLAKGLDN |
Parental | KLREDLERLKKIR-AHRGLRH-FWGLRVRGQHT |
K..EDL..L.KI..A.RGL.H..WG..V.GQ.T | |
Retrocopy | KFHEDL*HLRKIQ<APRGLHH<LWGFLVPGQDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 1233 .12 RPM |
SRP012922_cerebellum | 0 .00 RPM | 490 .76 RPM |
SRP012922_heart | 0 .00 RPM | 542 .95 RPM |
SRP012922_kidney | 1 .10 RPM | 1375 .55 RPM |
SRP012922_liver | 0 .62 RPM | 802 .67 RPM |
SRP012922_lung | 0 .00 RPM | 1687 .30 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 918 .73 RPM |
SRP012922_spleen | 0 .00 RPM | 2480 .37 RPM |