RetrogeneDB ID: | retro_eeur_498 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_327355:5410..5711(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSEEUG00000010297 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 52.43 % |
Parental protein coverage: | 67.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | RYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQY-KIPDWFLNRQKDVKDGKYSQVLANGLDNKL |
RYA...LRK.DI.L..R..ELTEDE...VIT.MQN..QY..IP.WFLN.Q..V..GKYSQV......NKL | |
Retrocopy | RYANMMLRKVDIGLIRRTEELTEDEMKCVITRMQNRCQY>NIPEWFLNKQ*NVQHGKYSQVWIDDPYNKL |
Parental | REDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
...LE.LK.I....G..H.......G.H.KTTG | |
Retrocopy | SKNLE*LKRIL--EGSTHSGDCIICGKHSKTTG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 142 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 346 .38 RPM |
SRP017611_liver | 0 .00 RPM | 299 .53 RPM |