RetrogeneDB ID: | retro_eeur_473 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_318563:3948..4403(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000001898 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSEEUG00000010297 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 84.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPE.FQHILRVLNTN.DG.RKIAFAITA.KGVG.RYAHVVLRKADIDLTKRAGE.TEDEVERVITI | |
Retrocopy | MSLVIPETFQHILRVLNTNMDGHRKIAFAITAVKGVG*RYAHVVLRKADIDLTKRAGEITEDEVERVITI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQH-TKTT |
MQNP.QYK.PDWFLNRQKD.KDG.YSQVLANGLD.KL.EDLE.LKKI...RGL.HFWGLRVRGQ..TKT. | |
Retrocopy | MQNPCQYKLPDWFLNRQKDAKDGRYSQVLANGLDKKLHEDLEQLKKIWVLRGLQHFWGLRVRGQQ<TKTI |
Parental | GRRGRTVGVSKKK |
G.RG.T.GVS.KK | |
Retrocopy | GCRGHTTGVSRKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .48 RPM | 142 .77 RPM |
SRP017611_kidney | 0 .19 RPM | 346 .38 RPM |
SRP017611_liver | 0 .00 RPM | 299 .53 RPM |