RetrogeneDB ID: | retro_eeur_464 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_313502:11978..12423(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EXOSC1 | ||
Ensembl ID: | ENSEEUG00000005647 | ||
Aliases: | None | ||
Description: | exosome component 1 [Source:HGNC Symbol;Acc:17286] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 77.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | APPVRYCIPGERLCNL-EEGSPGSGTY-TRHGYIFSSLAGCLTK-SSENGALPIVSVTRETESQLLPDVG |
APP.RYCIPGERLC.L.EEGS...GTY.T.H.YIFSS.AGCLTK.SSENG..PIVSVT..TESQLLPDVG | |
Retrocopy | APPMRYCIPGERLCTL<EEGSLCRGTY>TQHRYIFSSFAGCLTK<SSENGTFPIVSVT--TESQLLPDVG |
Parental | AIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEIYKS-FRPGDIVLAKVISLGD |
AIV.CKVSSI.S.FAKVHILYVGSTPLKNSF.GTI.K.DV.ATEKDKVEIYKS.F.PGDIVLA....L.. | |
Retrocopy | AIVICKVSSISSLFAKVHILYVGSTPLKNSFQGTICKDDVQATEKDKVEIYKS<FQPGDIVLANYL-LTT |
Parental | AQSNYLLTTAENELGV |
A.....L..A.NE..V | |
Retrocopy | AENELGLVVAYNESDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .94 RPM |
SRP017611_liver | 0 .00 RPM | 5 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006477 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007983 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005647 | 3 retrocopies |
retro_eeur_270, retro_eeur_438, retro_eeur_464 ,
|
Macropus eugenii | ENSMEUG00000002246 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009228 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034321 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011898 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016259 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003372 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048708 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006615 | 1 retrocopy |