RetrogeneDB ID: | retro_eeur_571 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_346538:5605..5985(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSEEUG00000003470 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722] |
Percent Identity: | 94.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQF-QGKAAIVEKLSSLPFQKIQHSIT |
MGDKPIWEQIG.SFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQF.QGKAAI.EKLSSL.FQKIQHSIT | |
Retrocopy | MGDKPIWEQIGCSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQF<QGKAAIAEKLSSLLFQKIQHSIT |
Parental | AQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNFG |
.QDHQPTPDSCIISMVVG.LKADEDPIMGFHQMFLLKNINDAWVCTND.FRLALHNFG | |
Retrocopy | VQDHQPTPDSCIISMVVG*LKADEDPIMGFHQMFLLKNINDAWVCTNDTFRLALHNFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 12 .57 RPM |
SRP017611_kidney | 0 .94 RPM | 21 .94 RPM |
SRP017611_liver | 0 .48 RPM | 12 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017548 | 5 retrocopies | |
Bos taurus | ENSBTAG00000006414 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000003521 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003470 | 2 retrocopies |
retro_eeur_149, retro_eeur_571 ,
|
Gorilla gorilla | ENSGGOG00000023925 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000009874 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000025175 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000012038 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000005517 | 6 retrocopies | |
Mus musculus | ENSMUSG00000008450 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006322 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015568 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018945 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006100 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030295 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000011016 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009251 | 2 retrocopies | |
Drosophila melanogaster | FBgn0031145 | 1 retrocopy |