RetrogeneDB ID: | retro_mmul_2593 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:69923655..69923871(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSMMUG00000012038 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.28 % |
Parental protein coverage: | 56.69 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITA |
MGDKPIWEQ.GSSFIQHYYQLFDNDRTQLGAIYIDASCLT.EGQQFQGKAA.VEKLSSLPFQKIQH..T. | |
Retrocopy | MGDKPIWEQVGSSFIQHYYQLFDNDRTQLGAIYIDASCLT*EGQQFQGKAATVEKLSSLPFQKIQH*PTP |
Parental | QD |
.D | |
Retrocopy | DD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 17 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 35 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 14 .72 RPM |
SRP007412_heart | 0 .06 RPM | 18 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 20 .54 RPM |
SRP007412_liver | 0 .04 RPM | 23 .24 RPM |
SRP007412_testis | 0 .04 RPM | 14 .63 RPM |