RetrogeneDB ID: | retro_sscr_740 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:109826622..109826926(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000030295 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.67 % |
Parental protein coverage: | 80.31 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | WEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKTAIVEKLSSLPFQKIQHSITAQDHQPT |
WEQIG.SFIQHYYQ.FDNDRT.LG.I.I..SCL.WEGQQFQGK.A.VEKLSSLPFQKI.H.I.AQD.QP. | |
Retrocopy | WEQIGCSFIQHYYQVFDNDRT*LGIISINTSCLSWEGQQFQGKAATVEKLSSLPFQKI*HRIMAQDCQPI |
Parental | PDSCIISMVVGQLKADEDPIMG-FHQMFLLKNI |
PDSCIISMV.G.LK.DE.P..G.FHQ.FLLKNI | |
Retrocopy | PDSCIISMVLGSLKGDE-PHHG>FHQIFLLKNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 43 .40 RPM |
SRP014902_testis | 0 .00 RPM | 20 .09 RPM |
SRP018288_heart | 0 .00 RPM | 27 .92 RPM |
SRP018288_kidney | 0 .00 RPM | 27 .68 RPM |
SRP018288_liver | 0 .00 RPM | 17 .91 RPM |
SRP018288_lung | 0 .00 RPM | 67 .51 RPM |
SRP018856_adipose | 0 .00 RPM | 17 .94 RPM |
SRP035408_brain | 0 .00 RPM | 20 .52 RPM |
SRP035408_liver | 0 .00 RPM | 12 .62 RPM |