RetrogeneDB ID: | retro_sscr_1223 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | Y:1212881..1213110(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000030295 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.09 % |
Parental protein coverage: | 59.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IDASCLT-WEGQQFQGKTA-IVEKLSSLPFQKIQHSITA-QDHQPTPDSCIISMVVGQLKADEDPIMGFH |
ID.SCL..WEGQQFQGK......KL.SL.FQK.QHSI...QDHQ..P.S.II.M.V.QLK.DE.PI.GFH | |
Retrocopy | IDMSCLI<WEGQQFQGKIVPFLTKLYSLQFQKFQHSIMT<QDHQHIPESSIITMAVDQLKTDEYPILGFH |
Parental | QMFLLKNIN |
QMF.LKNIN | |
Retrocopy | QMF*LKNIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 43 .40 RPM |
SRP014902_testis | 0 .00 RPM | 20 .09 RPM |
SRP018288_heart | 0 .00 RPM | 27 .92 RPM |
SRP018288_kidney | 0 .00 RPM | 27 .68 RPM |
SRP018288_liver | 0 .00 RPM | 17 .91 RPM |
SRP018288_lung | 0 .00 RPM | 67 .51 RPM |
SRP018856_adipose | 0 .00 RPM | 17 .94 RPM |
SRP035408_brain | 0 .00 RPM | 20 .52 RPM |
SRP035408_liver | 0 .00 RPM | 12 .62 RPM |