RetrogeneDB ID: | retro_eeur_6 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_236563:336..1056(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSEEUG00000007440 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB | ||
Ensembl ID: | ENSEEUG00000015568 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:11153] |
Percent Identity: | 90.48 % |
Parental protein coverage: | 81.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVL |
TVGKS.KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN.KQ.EREEKRVLGLVL | |
Retrocopy | TVGKSNKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVL |
Parental | LRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQV |
LRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG.GRAAGRG.PAGVP.PQAPAGLAGPVRGVGGPSQQV | |
Retrocopy | LRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQV |
Parental | MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT |
MTPQGRGTVAAAA.AATASIAGAPTQYPPGRG.PP.P.GR..PPPG.M.PPPGMRPPMGPP.G.PP.RGT | |
Retrocopy | MTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPTPVGRATPPPGIMAPPPGMRPPMGPPIGLPPSRGT |
Parental | PMGMPPPGMRPPPPGEFDPWP |
P.GMPPPGMRPPPPG...P.P | |
Retrocopy | PIGMPPPGMRPPPPGIRGPPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 242 .36 RPM | 19 .82 RPM |
SRP017611_kidney | 30 .38 RPM | 47 .63 RPM |
SRP017611_liver | 14 .47 RPM | 14 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011353 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006693 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020971 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007896 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015568 | 3 retrocopies |
retro_eeur_312, retro_eeur_434, retro_eeur_6 ,
|
Felis catus | ENSFCAG00000014447 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016519 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016951 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009283 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009206 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016149 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007459 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010841 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017013 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010040 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000014498 | 2 retrocopies |