RetrogeneDB ID: | retro_tsyr_719 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_180800:3119..3492(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPB | ||
Ensembl ID: | ENSTSYG00000014498 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:11153] |
Percent Identity: | 59.85 % |
Parental protein coverage: | 55.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | VPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRG-VGGPSQQVMTPQGRGTV-AAAAAAATASIA |
V.LAGAAG..GIGRAAGRGI..G.PMPQ..A.LAGPV.G.VG.PSQQ.M.PQG.G.....AA.A.TA.IA | |
Retrocopy | VSLAGAAGNLGIGRAAGRGIQVGIPMPQVSARLAGPVLG<VGRPSQQMMAPQGSGML>TTAA-AVTACIA |
Parental | GAPTQYPPGR-GGPPPPMGRGAPPPGM---MGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGM |
G.PTQYPPG..G.P.PP...G.PPPGM....GPP.G..P..G.P.G..P....P...PPPG. | |
Retrocopy | GPPTQYPPGH>GSPSPPVMMG-PPPGMKPLLGPPGGIPPGRGAPIGKSPSGVQP---PPPGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011353 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000006693 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000020971 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007896 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015568 | 3 retrocopies | |
Felis catus | ENSFCAG00000014447 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000016519 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000016951 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000009283 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009206 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016149 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007459 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010841 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017013 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010040 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000014498 | 2 retrocopies |
retro_tsyr_45, retro_tsyr_719 ,
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