Parental gene:

SNRPB, ENSEEUG00000015568

Aliases:None
Description:small nuclear ribonucleoprotein polypeptides B and B1 [Source:HGNC Symbol;Acc:11153]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3258:4871..12625(-)


>ENSEEUG00000015568
ATGACTGTGGGCAAGAGCAGCAAGATGCTGCAGCACATCGACTACAGGATGAGGTGCATCCTGCAAGACGGCCGCATCTT
CATTGGCACCTTCAAGGCTTTTGACAAGCATATGAATTTGATCCTGTGTGACTGTGATGAGTTCAGGAAGATCAAGCCGA
AGAACTCGAAACAAGCAGAAAGAGAAGAAAAACGAGTCCTTGGTCTGGTGCTGCTTCGAGGGGAGAACCTGGTCTCAATG
ACAGTAGAGGGACCTCCTCCCAAAGATACTGGCATAGCCCGAGTGCCACTGGCTGGAGCTGCTGGAGGCCCAGGTATCGG
CAGGGCTGCTGGCAGAGGAATCCCAGCCGGTGTTCCCATGCCACAGGCTCCTGCAGGACTTGCTGGGCCAGTCCGAGGTG
TTGGTGGGCCATCCCAACAGGTGATGACCCCACAAGGAAGAGGCACCGTTGCTGCTGCTGCAGCTGCTGCCACAGCCAGT
ATTGCGGGAGCTCCAACCCAGTACCCACCGGGCCGTGGAGGTCCTCCCCCACCTATGGGCAGAGGGGCACCCCCTCCCGG
CATGATGGGCCCACCTCCTGGTATGAGGCCTCCAATGGGTCCCCCAATGGGGATACCCCCTGGAAGAGGAACTCCAATGG
GCATGCCCCCTCCAGGAATGCGGCCCCCTCCCCCTGGGGAGTTCGACCCTTGGCCACAGAGTTACGAAGTAGCTCCGCAG
AAGCGTGGGCCCGGTTCCCCAGGGCCACGTTACTACAGACCTGTTTGTTTGTTATGCTGTTGTTCACGGAGTATCACAGG
ATTGTCTGGTTTCACAGGGCCCCCTCCCCCGGGATTGTGCCCTCCAAGGCCCTAG

Library Parental gene expression (RPM)
SRP017611_liver 14 .95 RPM
SRP017611_kidney 47 .63 RPM
SRP017611_brain 19 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011353 ortholog_one2one 1 retrogene
retro_amel_1403,
Canis familiaris ENSCAFG00000006693 ortholog_one2many 3 retrogenes
retro_cfam_1268, retro_cfam_1773, retro_cfam_461,
Callithrix jacchus ENSCJAG00000020971 ortholog_one2many 2 retrogenes
retro_cjac_172, retro_cjac_1739,
Dasypus novemcinctus ENSDNOG00000007896 ortholog_one2one 2 retrogenes
retro_dnov_2060, retro_dnov_2471,
Felis catus ENSFCAG00000014447 ortholog_one2one 2 retrogenes
retro_fcat_1788, retro_fcat_1960,
Microcebus murinus ENSMICG00000016519 ortholog_one2one 4 retrogenes
retro_mmur_1012, retro_mmur_1478, retro_mmur_546, retro_mmur_861,
Myotis lucifugus ENSMLUG00000016951 ortholog_one2one 1 retrogene
retro_mluc_1725,
Mustela putorius furo ENSMPUG00000009283 ortholog_one2one 1 retrogene
retro_mputfur_1153,
Nomascus leucogenys ENSNLEG00000009206 ortholog_one2one 1 retrogene
retro_nleu_761,
Otolemur garnettii ENSOGAG00000016149 ortholog_one2one 4 retrogenes
retro_ogar_2197, retro_ogar_2841, retro_ogar_2918, retro_ogar_3236,
Ochotona princeps ENSOPRG00000007459 ortholog_one2one 2 retrogenes
retro_opri_697, retro_opri_72,
Pongo abelii ENSPPYG00000010841 ortholog_one2one 1 retrogene
retro_pabe_2265,
Pteropus vampyrus ENSPVAG00000017013 ortholog_one2one 1 retrogene
retro_pvam_289,
Tupaia belangeri ENSTBEG00000010040 ortholog_one2one 3 retrogenes
retro_tbel_1117, retro_tbel_1171, retro_tbel_2839,
Tarsius syrichta ENSTSYG00000014498 ortholog_one2one 2 retrogenes
retro_tsyr_45, retro_tsyr_719,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_6 90.48 81.34
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2. retro_eeur_312 92.62 52.46
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3. retro_eeur_434 92.34 77.46
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Download FASTA sequences of all ENSEEUG00000015568 retrocopies