RetrogeneDB ID: | retro_eeur_615 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_365460:13860..14229(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM126A | ||
Ensembl ID: | ENSEEUG00000009105 | ||
Aliases: | None | ||
Description: | transmembrane protein 126A [Source:HGNC Symbol;Acc:25382] |
Percent Identity: | 84.55 % |
Parental protein coverage: | 75.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LPMTVIPFLTANVSYKALINFPLSTGELNCETCTIIRGGLVGLVFGGLYPVFLALPVNGGLAARYNSVLL |
L.MTVIPF.TAN.SYKALINFPLSTG.LNCE.CT.I..GLVGLV.G.LYPVFLALPVNGGLAARYNS.LL | |
Retrocopy | LAMTVIPFFTANISYKALINFPLSTGDLNCEICTVIWRGLVGLVLGSLYPVFLALPVNGGLAARYNSALL |
Parental | PEKGNIFNYWIRTSKPIFRKMVFPVLLQTMFTAYLGSRQYKLLIKALQLPEPQ |
PEKGNI..Y.IRTSKPI.RKMVFP.LLQT.FTAYLG.RQYKLLIKA.QLPEPQ | |
Retrocopy | PEKGNILKY*IRTSKPIVRKMVFPILLQTTFTAYLGYRQYKLLIKAPQLPEPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .69 RPM |
SRP017611_liver | 0 .00 RPM | 4 .02 RPM |