RetrogeneDB ID: | retro_cjac_4040 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | X:3322067..3322652(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022253 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMEM126A | ||
Ensembl ID: | ENSCJAG00000014466 | ||
Aliases: | None | ||
Description: | transmembrane protein 126A [Source:HGNC Symbol;Acc:25382] |
Percent Identity: | 93.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MENHE-SNNEENIFEIINRKINQLPEAERNLLENGSVYVGLNAALCGLIGNSLFRRVLNVTKARIVSALP |
MENHE..NNEE..FEII..KINQLPEAERNLLENGSVYVGLNAALCGLI.NSLFRRVLNVTKA.IVSALP | |
Retrocopy | MENHEFNNNEESLFEIIKKKINQLPEAERNLLENGSVYVGLNAALCGLIRNSLFRRVLNVTKACIVSALP |
Parental | MAVLPFFTTEVTYRGFVNFPLITGDLNCETCTATRSGLVGLLVGGLYPVFLALPVNGSLAARYETALLPN |
MAVLPFFTTEVTYRGFVNFPLITGD.NCETCTATRSGLVGL..GGLYPVFLALPVNGSLAARY.TALLPN | |
Retrocopy | MAVLPFFTTEVTYRGFVNFPLITGDSNCETCTATRSGLVGLPGGGLYPVFLALPVNGSLAARYKTALLPN |
Parental | KGNILSYWIRVSKPVFRKMLFPILLQTVFSAYLGSKQYKLLIKALHLPEPGQEIH |
KGNILSYWIRVSKPVFRKMLFPILLQTVFSAYLGSKQYKLLIKALHLPEPGQEIH | |
Retrocopy | KGNILSYWIRVSKPVFRKMLFPILLQTVFSAYLGSKQYKLLIKALHLPEPGQEIH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 9 .41 RPM |
SRP051959_heart | 0 .02 RPM | 20 .47 RPM |
SRP051959_kidney | 0 .00 RPM | 14 .18 RPM |
SRP051959_liver | 0 .00 RPM | 13 .88 RPM |
SRP051959_lung | 0 .05 RPM | 8 .74 RPM |
SRP051959_lymph_node | 0 .00 RPM | 8 .65 RPM |
SRP051959_skeletal_muscle | 0 .07 RPM | 41 .99 RPM |
SRP051959_spleen | 0 .00 RPM | 8 .30 RPM |