RetrogeneDB ID: | retro_rnor_918 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:54613343..54613687(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tmem126a | ||
Ensembl ID: | ENSRNOG00000022748 | ||
Aliases: | Tmem126a, RGD1305677 | ||
Description: | Transmembrane protein 126A [Source:UniProtKB/Swiss-Prot;Acc:Q5HZA9] |
Percent Identity: | 92.24 % |
Parental protein coverage: | 58.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MESHKPSTNKDDLIFNIIPRKIKQLPESDRNLLEYGSAYIGLNAAFGGLIANSLFRRILNVTQ-ARVASS |
M.SHKPSTNKDDLIFNII.RKIKQLPESDRNLLEYGS.YIGLNAAFGGLIANSLFRRILNVTQ.ARVASS | |
Retrocopy | M*SHKPSTNKDDLIFNIISRKIKQLPESDRNLLEYGSVYIGLNAAFGGLIANSLFRRILNVTQ<ARVASS |
Parental | LPMAVIPFLTANLSYHSFVSLPLSTGNLNCEICTTTRGTLVGFVLG |
LP.AVIPFLTANLSYHSFV.LPLSTGNLNCE.CTTT.G.LVGFVLG | |
Retrocopy | LPVAVIPFLTANLSYHSFVNLPLSTGNLNCETCTTTWGALVGFVLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .47 RPM |
SRP017611_liver | 0 .00 RPM | 13 .25 RPM |