RetrogeneDB ID: | retro_eeur_703 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_90828:1633..1961(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN1 | ||
Ensembl ID: | ENSEEUG00000004136 | ||
Aliases: | None | ||
Description: | akirin 1 [Source:HGNC Symbol;Acc:25744] |
Percent Identity: | 83.64 % |
Parental protein coverage: | 56.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YSRYQRWRHLEVVLNQSEACTSESQSHSSALTAPSSPGSSWMKKDQPTFTL-RQVGIICERLLKDYEDKI |
Y..YQRWRHLEVVLNQSEACTSESQS.SSALTAPSSPGSSWMKKDQ..FTL..Q..II..RLLKDYE.K. | |
Retrocopy | YNCYQRWRHLEVVLNQSEACTSESQSYSSALTAPSSPGSSWMKKDQSIFTL>PQGAIIYDRLLKDYEEKS |
Parental | REEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS |
.E.YEQILNTKLAEQYESFVKFTHDQIMR.YG.RPTS.VS | |
Retrocopy | QEKYEQILNTKLAEQYESFVKFTHDQIMRQYGSRPTS*VS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 13 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .07 RPM |
SRP017611_liver | 0 .00 RPM | 7 .23 RPM |