RetrogeneDB ID: | retro_dnov_509 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_5504:194322..194702(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN1 | ||
Ensembl ID: | ENSDNOG00000000332 | ||
Aliases: | None | ||
Description: | akirin 1 [Source:HGNC Symbol;Acc:25744] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 67.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | PPGSERRLPTPEQIFQNIKQEYSR-YQRWRHLEVVLNQSESCTS-ESHPHSSALTAPSSPGSSWMKKDQP |
PPGSE...PTPEQI.QN.K......YQRWRH..V.LNQSE.CTS..S..HSSAL..PSS..SSW.KKDQ. | |
Retrocopy | PPGSEQHPPTPEQILQNMKEDCAA<YQRWRHSDVILNQSEACTS<NSPVHSSALITPSSTESSWIKKDQA |
Parental | TFTLRQVGIICERLLKDYE-DKIREEYEQILNTKLAEQYESFVK-FTHDQIMRRYGTRPTSY |
.FTL.Q...I.E.L.K.Y..D.I.EE..QILNTKLAE.YESFVK..THDQI...YGTRP.S. | |
Retrocopy | IFTLHQAEVIREYLFKNYK<DEIQEECKQILNTKLAEEYESFVK<ITHDQIT*QYGTRPISF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 23 .92 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .61 RPM |
SRP012922_heart | 0 .00 RPM | 7 .89 RPM |
SRP012922_kidney | 0 .00 RPM | 7 .94 RPM |
SRP012922_liver | 0 .00 RPM | 13 .16 RPM |
SRP012922_lung | 0 .00 RPM | 25 .35 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .65 RPM |
SRP012922_spleen | 0 .00 RPM | 21 .98 RPM |