RetrogeneDB ID:

retro_ogar_674

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873525.1:4721092..4721525(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:AKIRIN1
Ensembl ID:ENSOGAG00000007962
Aliases:None
Description:akirin 1 [Source:HGNC Symbol;Acc:25744]


Retrocopy-Parental alignment summary:






>retro_ogar_674
GCCGTACCCCCAGCCTCAGGGTGCTGGAAGCCTCTGACACAGCCCCCACAGCTGACTCTGCAACAGCCTGCCTCACTGGG
CAGTGAGCCGCACCTTTCAACTCCAGGGCAAAATTTTCAGAACATAAAGGAAGAATATAGAGGACATCTAAAGGTTCTTA
ATCAGGGTGAAGTCTTTGCTTGGGAAAGTCAACCTCACTCTTCAGCAGTTGCAGCACCTTGTGGTCCAGGTTCCTCCTGG
ATAAAGAAGGACCAGCCACCTTTCCCCTTGTACAGCTTGGAGTAATAGGTGAGTGTCTCTTAAAAGACTGTAAAGGTGAG
ACTCAGAAGCAGTATGAGCAAATCCTAACACCAAACTAGCAGAACAATGTGAATCTTCTGTGAAATTCACACATGATCAA
ATTACGCACCTGCATGGGACAAGGCCAACAACA

ORF - retro_ogar_674 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 51.33 %
Parental protein coverage: 75.51 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAEPPPPPLQTQIPQPTLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEVCASESQPHS
A.PP.........QP.......P.S....P......QN.......Y....HL.V.LNQ.EV.A.ESQPHS
RetrocopyAVPPASGCWKPLTQPPQLTLQQPASLGSEPHLSTPGQNFQNIKEEYRG--HLKV-LNQGEVFAWESQPHS
ParentalSALTAPSSPGSSWMKKDQP-TFTLRQVGIICERLLKDYEDKIREEYEQVL-NTKLAEQYESFVKFTHDQI
SA..AP..PGSSW.KKDQP.TF.L.Q.G.I.E.LLKD........YEQ.L.NTKLAEQ.ES.VKFTHDQI
RetrocopySAVAAPCGPGSSWIKKDQP<TFPLVQLGVIGECLLKDCKGETQKQYEQIL<NTKLAEQCESSVKFTHDQI
ParentalMRRYGTRPTS
....GTRPT.
RetrocopyTHLHGTRPTT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_674 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 39 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000047151 retrocopy
Canis familiaris ENSCAFG000000031864 retrocopies
Choloepus hoffmanni ENSCHOG000000030103 retrocopies
Callithrix jacchus ENSCJAG000000023093 retrocopies
Cavia porcellus ENSCPOG000000154191 retrocopy
Dasypus novemcinctus ENSDNOG000000003323 retrocopies
Dipodomys ordii ENSDORG000000093242 retrocopies
Equus caballus ENSECAG000000125891 retrocopy
Erinaceus europaeus ENSEEUG000000041363 retrocopies
Echinops telfairi ENSETEG000000067511 retrocopy
Homo sapiens ENSG000001745741 retrocopy
Gorilla gorilla ENSGGOG000000060531 retrocopy
Macropus eugenii ENSMEUG000000111541 retrocopy
Monodelphis domestica ENSMODG000000177031 retrocopy
Mustela putorius furoENSMPUG000000144401 retrocopy
Mus musculus ENSMUSG000000230751 retrocopy
Nomascus leucogenys ENSNLEG000000118491 retrocopy
Oryctolagus cuniculus ENSOCUG000000055001 retrocopy
Otolemur garnettii ENSOGAG00000007962 2 retrocopies
retro_ogar_445, retro_ogar_674 ,
Pongo abelii ENSPPYG000000015112 retrocopies
Sarcophilus harrisii ENSSHAG000000174581 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000232191 retrocopy
Tarsius syrichta ENSTSYG000000033451 retrocopy
Tursiops truncatus ENSTTRG000000022932 retrocopies



Copyright © RetrogeneDB 2014-2017