RetrogeneDB ID: | retro_eeur_422 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_294606:6947..7295(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AKIRIN1 | ||
Ensembl ID: | ENSEEUG00000004136 | ||
Aliases: | None | ||
Description: | akirin 1 [Source:HGNC Symbol;Acc:25744] |
Percent Identity: | 68.38 % |
Parental protein coverage: | 60.62 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 0 |
Parental | QIFQNIKQEYSRYQRWRHLEVVLNQSEACTSESQSHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERL |
Q.F.NIKQEY..YQR.RH.EVV.NQ....T.ESQ.H.SA.T....PGS.WMKKDQP.FT..QVGII.E.L | |
Retrocopy | QVFKNIKQEYNHYQR*RH*EVVPNQNNV*TLESQPHFSAFTTANCPGS*WMKKDQPNFTFQQVGIIHE*L |
Parental | LKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYV |
LKD..DKI..EYEQILNTKL.E.YE.FVKFT.DQIM..YGTRP.SY. | |
Retrocopy | LKD*KDKIL*EYEQILNTKLTE-YEYFVKFT*DQIM*CYGTRPSSYM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 23 .07 RPM |
SRP017611_liver | 0 .00 RPM | 7 .23 RPM |