RetrogeneDB ID: | retro_etel_1200 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_226752:8275..8788(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBM8A | ||
Ensembl ID: | ENSETEG00000008411 | ||
Aliases: | None | ||
Description: | RNA binding motif protein 8A [Source:HGNC Symbol;Acc:9905] |
Percent Identity: | 78.61 % |
Parental protein coverage: | 98.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MADVLDLHEAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGYEDGSRARMREDYDSVEQDGDEPGPQRSV |
MAD.LDLHEAGGEDFAMDEDGDESIH.LKEKAKKRKGRG.GY.DGSRARMREDYDSVEQDGDEPGPQRSV | |
Retrocopy | MADALDLHEAGGEDFAMDEDGDESIH*LKEKAKKRKGRGLGY*DGSRARMREDYDSVEQDGDEPGPQRSV |
Parental | EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLRGYTLVEYETYKGAQACPLGGLNGQGL |
EGWILFVTGVHEEATEEDIHD.FAEY.EIKNIHLNLDRRTG.L.GY.LVEYETYK.AQA....GLNGQ.L | |
Retrocopy | EGWILFVTGVHEEATEEDIHDNFAEYREIKNIHLNLDRRTGHLKGYILVEYETYKEAQAA-MEGLNGQDL |
Parental | MGQAPXXXXXXXXXXXXXXXRRGGRRRSRSPDR |
M.Q.................R.G.R.RSRSPD. | |
Retrocopy | MVQPISVDWCFVRGLPKSKRRGGRR-RSRSPDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000016021 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008411 | 1 retrocopy |
retro_etel_1200 ,
|
Felis catus | ENSFCAG00000026379 | 1 retrocopy | |
Homo sapiens | ENSG00000131795 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016058 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017436 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038374 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000202 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000013316 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000021215 | 2 retrocopies | |
Sorex araneus | ENSSARG00000013289 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000014947 | 2 retrocopies |