RetrogeneDB ID: | retro_rnor_1828 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:137742915..137743340(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rbm8a | ||
Ensembl ID: | ENSRNOG00000021215 | ||
Aliases: | Rbm8a, Rbm8 | ||
Description: | RNA-binding protein 8A [Source:UniProtKB/Swiss-Prot;Acc:Q27W01] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 82.18 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD |
DESIHKL.EKAKK.KG..FGSE.GS.A...EDYDS.EQD.DEPGPQ.SVE..ILFVTGVHEEATEEDIHD | |
Retrocopy | DESIHKLGEKAKKLKGLSFGSE-GSQA*TWEDYDSLEQDVDEPGPQHSVEV*ILFVTGVHEEATEEDIHD |
Parental | KFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP-KGKRR |
K..EYG.I.NIHLNLDR.TG.LK.YTL.EYETYKE.QAA.EGLNGQDLMGQPIS..WCFV.G.P.KG.RR | |
Retrocopy | KLSEYG*IINIHLNLDRHTGCLKEYTLAEYETYKEDQAAIEGLNGQDLMGQPISIHWCFVCGSP<KGRRR |
Parental | GGRR |
..RR | |
Retrocopy | RSRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .33 RPM |
SRP017611_liver | 0 .00 RPM | 12 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000016021 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008411 | 1 retrocopy | |
Felis catus | ENSFCAG00000026379 | 1 retrocopy | |
Homo sapiens | ENSG00000131795 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016058 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017436 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038374 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000000202 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000013316 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000021215 | 2 retrocopies |
retro_rnor_1434, retro_rnor_1828 ,
|
Sorex araneus | ENSSARG00000013289 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000014947 | 2 retrocopies |