RetrogeneDB ID: retro_dnov_47

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: scaffold_43468:18874..19144(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSDNOG00000025265
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSDNOG00000016021
• Aliases: None
• Description: None

Sequence

>retro_dnov_47
AGCATCCAAGAACTGAAAGAAAAAGTGAAGAAACGGAAGGGTCGCGGTTTTGGCTCTGAAGAAGGGTCCCGAGCGCACAT
GCGTGAGGATTATGACAGCGTGGAGCAGGATGGCGATGAGCCCGGACCACAGCGCTCTGTGGAAGGTTGGATTCTCTTTG
TCACTGGAGTCCATGAGGAAGCCACCGAAGAAGACATCCATGACAAATTCACCGAGTACGGGGAGATAAAAAACATCCAC
CTCAGTCTCGACAGGCGTACGGGGTACTTG

Alignment

ORF - retro_dnov_47 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.03 %
• Parental protein coverage: 74.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIH
          SI..LKEK.KKRKGRGFGSEEGSRA.MREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIH
Retrocopy SIQELKEKVKKRKGRGFGSEEGSRAHMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	0.39 RPM	27.03 RPM
SRP012922_cerebellum	0.41 RPM	15.12 RPM
SRP012922_heart	0.23 RPM	6.50 RPM
SRP012922_kidney	0.55 RPM	16.43 RPM
SRP012922_liver	0.31 RPM	10.06 RPM
SRP012922_lung	0.46 RPM	18.17 RPM
SRP012922_quadricep_muscle	0.00 RPM	4.67 RPM
SRP012922_spleen	0.34 RPM	17.28 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_47 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000016021	1 retrocopy	retro_dnov_47 ,
Echinops telfairi	ENSETEG00000008411	1 retrocopy	retro_etel_1200,
Felis catus	ENSFCAG00000026379	1 retrocopy	retro_fcat_955,
Homo sapiens	ENSG00000131795	1 retrocopy	retro_hsap_1349,
Macropus eugenii	ENSMEUG00000016058	2 retrocopies	retro_meug_873, retro_meug_952,
Myotis lucifugus	ENSMLUG00000017436	2 retrocopies	retro_mluc_179, retro_mluc_1932,
Mus musculus	ENSMUSG00000038374	2 retrocopies	retro_mmus_137, retro_mmus_776,
Otolemur garnettii	ENSOGAG00000000202	2 retrocopies	retro_ogar_2694, retro_ogar_771,
Ochotona princeps	ENSOPRG00000013316	2 retrocopies	retro_opri_1146, retro_opri_659,
Rattus norvegicus	ENSRNOG00000021215	2 retrocopies	retro_rnor_1434, retro_rnor_1828,
Sorex araneus	ENSSARG00000013289	2 retrocopies	retro_sara_116, retro_sara_217,
Tupaia belangeri	ENSTBEG00000014947	2 retrocopies	retro_tbel_3548, retro_tbel_804,