RetrogeneDB ID: | retro_etel_1893 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_312121:3927..4192(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL11 | ||
Ensembl ID: | ENSETEG00000014825 | ||
Aliases: | None | ||
Description: | ribosomal protein L11 [Source:HGNC Symbol;Acc:10301] |
Percent Identity: | 62.64 % |
Parental protein coverage: | 85.58 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | AVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDL-GIKYDPSI-GIYGLDFYVVLGR |
..HCTV.GAKAEEILEKG.KV.E..LR..NFS.T.NFGFGIQEHI...G...DPS..G.YG.D...VL.R | |
Retrocopy | SIHCTVHGAKAEEILEKGIKVQE**LRNTNFSVTRNFGFGIQEHIYV<GEEHDPSL<GVYGWDLDGVLER |
Parental | PGFSIADKKRRTGCIGAKHRI |
P.FS.ADKK....CI..KH.I | |
Retrocopy | PSFSFADKKHNAACIWPKHGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013232 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011230 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000012496 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014825 | 8 retrocopies |
retro_etel_1054, retro_etel_136, retro_etel_1452, retro_etel_1893 , retro_etel_2018, retro_etel_500, retro_etel_62, retro_etel_948,
|
Gorilla gorilla | ENSGGOG00000014628 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000013738 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002445 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000012828 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059291 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000000321 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026260 | 9 retrocopies |