Parental gene:

ENSCAFG00000013232

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:2:75781258..75785591(-)


>ENSCAFG00000013232
ATGGCGCAGGATCAAGGTGAAAAGGAGAACCCCATGCGGGAGCTTCGCATCCGCAAACTCTGCCTCAACATCTGTGTGGG
GGAGAGTGGAGACAGACTGACCCGCGCGGCCAAGGTGCTGGAGCAGCTCACGGGCCAGACCCCAGTGTTCTCCAAAGCTA
GGTACACGGTTAGATCCTTTGGTATCAGGAGAAATGAAAAGATTGCTGTCCACTGCACAGTCCGTGGGGCCAAAGCAGAA
GAAATCCTGGAGAAAGGTCTAAAGGTGCGAGAGTATGAGTTAAGAAAAAATAACTTCTCCGATACTGGAAACTTTGGTTT
TGGGATCCAGGAGCACATCGATCTGGGGATCAAATATGACCCAAGCATTGGTATCTACGGCCTGGACTTCTATGTGGTGC
TGGGTAGGCCAGGTTTCAGCATCGCAGACAAGAAGCGCAGGACAGGCTGCATTGGGGCCAAACACAGAATCAGCAAAGAG
GAAGCCATGCGCTGGTTCCAGCAGAAGTATGATGGGATCATCCTTCCTGGCAAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 243 .34 RPM
SRP017611_brain 61 .13 RPM
SRP017611_kidney 775 .80 RPM
SRP017611_liver 176 .93 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005058 possible_ortholog 1 retrogene
retro_acar_165,
Ailuropoda melanoleuca ENSAMEG00000009704 possible_ortholog 3 retrogenes
retro_amel_1123, retro_amel_1754, retro_amel_234,
Bos taurus ENSBTAG00000020905 ortholog_one2many 1 retrogene
retro_btau_267,
Callithrix jacchus ENSCJAG00000020953 ortholog_one2many 1 retrogene
retro_cjac_790,
Cavia porcellus ENSCPOG00000008432 possible_ortholog 2 retrogenes
retro_cpor_261, retro_cpor_788,
Dasypus novemcinctus ENSDNOG00000011230 ortholog_one2many 2 retrogenes
retro_dnov_1453, retro_dnov_605,
Dipodomys ordii ENSDORG00000012496 possible_ortholog 1 retrogene
retro_dord_143,
Equus caballus ENSECAG00000021136 possible_ortholog 3 retrogenes
retro_ecab_471, retro_ecab_669, retro_ecab_926,
Echinops telfairi ENSETEG00000014825 possible_ortholog 8 retrogenes
retro_etel_1054, retro_etel_136, retro_etel_1452, retro_etel_1893, retro_etel_2018, retro_etel_500, retro_etel_62, retro_etel_948,
Felis catus ENSFCAG00000028651 possible_ortholog 2 retrogenes
retro_fcat_1069, retro_fcat_1877,
Homo sapiens ENSG00000142676 ortholog_one2many 6 retrogenes
retro_hsap_1159, retro_hsap_1801, retro_hsap_2272, retro_hsap_3238, retro_hsap_606, retro_hsap_712,
Gorilla gorilla ENSGGOG00000014628 possible_ortholog 6 retrogenes
retro_ggor_1192, retro_ggor_1325, retro_ggor_1690, retro_ggor_2204, retro_ggor_533, retro_ggor_603,
Loxodonta africana ENSLAFG00000030853 ortholog_one2many 2 retrogenes
retro_lafr_371, retro_lafr_434,
Macropus eugenii ENSMEUG00000013738 ortholog_one2many 3 retrogenes
retro_meug_488, retro_meug_517, retro_meug_633,
Myotis lucifugus ENSMLUG00000008868 possible_ortholog 3 retrogenes
retro_mluc_1271, retro_mluc_1345, retro_mluc_2321,
Macaca mulatta ENSMMUG00000002445 possible_ortholog 3 retrogenes
retro_mmul_2039, retro_mmul_2415, retro_mmul_2462,
Monodelphis domestica ENSMODG00000012828 ortholog_one2many 1 retrogene
retro_mdom_641,
Mus musculus ENSMUSG00000059291 ortholog_many2many 3 retrogenes
retro_mmus_144, retro_mmus_146, retro_mmus_78,
Ornithorhynchus anatinus ENSOANG00000000321 ortholog_one2many 1 retrogene
retro_oana_49,
Oryctolagus cuniculus ENSOCUG00000022928 ortholog_one2many 1 retrogene
retro_ocun_1387,
Otolemur garnettii ENSOGAG00000032741 possible_ortholog 6 retrogenes
retro_ogar_1325, retro_ogar_1935, retro_ogar_1963, retro_ogar_2322, retro_ogar_2630, retro_ogar_569,
Pongo abelii ENSPPYG00000001736 ortholog_one2many 6 retrogenes
retro_pabe_1478, retro_pabe_1946, retro_pabe_2686, retro_pabe_612, retro_pabe_615, retro_pabe_964,
Pteropus vampyrus ENSPVAG00000004282 ortholog_one2many 1 retrogene
retro_pvam_1068,
Rattus norvegicus ENSRNOG00000026260 ortholog_one2many 9 retrogenes
retro_rnor_1735, retro_rnor_2287, retro_rnor_2314, retro_rnor_2690, retro_rnor_271, retro_rnor_2725, retro_rnor_668, retro_rnor_795, retro_rnor_919,
Sarcophilus harrisii ENSSHAG00000006767 possible_ortholog 1 retrogene
retro_shar_638,
Sus scrofa ENSSSCG00000024260 ortholog_one2many 4 retrogenes
retro_sscr_1048, retro_sscr_1049, retro_sscr_1074, retro_sscr_819,
Tupaia belangeri ENSTBEG00000007838 possible_ortholog 5 retrogenes
retro_tbel_2850, retro_tbel_3023, retro_tbel_3273, retro_tbel_4736, retro_tbel_596,
Tarsius syrichta ENSTSYG00000001349 ortholog_one2many 6 retrogenes
retro_tsyr_1138, retro_tsyr_127, retro_tsyr_1583, retro_tsyr_1605, retro_tsyr_516, retro_tsyr_520,
Tursiops truncatus ENSTTRG00000016115 possible_ortholog 4 retrogenes
retro_ttru_1525, retro_ttru_1779, retro_ttru_476, retro_ttru_911,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_543 93.96 83.71
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2. retro_cfam_1059 63.11 67.42
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Download FASTA sequences of all ENSCAFG00000013232 retrocopies