RetrogeneDB ID: | retro_oana_49 | ||
Retrocopylocation | Organism: | Platypus (Ornithorhynchus anatinus) | |
Coordinates: | Contig217539:716..1054(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL11 | ||
Ensembl ID: | ENSOANG00000000321 | ||
Aliases: | None | ||
Description: | ribosomal protein L11 [Source:HGNC Symbol;Acc:10301] |
Percent Identity: | 67.54 % |
Parental protein coverage: | 62.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | RRNEKIAVHCTVRGAKAEEILEKGLK-VREYELRKN-NFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDF |
RRNEKIA.H.TVRG.KA.EILE.GLK.V.EYEL.K..NFSDTGNFGFGI.EHIDLG.KYDP...IYG.DF | |
Retrocopy | RRNEKIACHVTVRGQKAWEILERGLK>VKEYELKKK>NFSDTGNFGFGIEEHIDLGLKYDPNSAIYGMDF |
Parental | YVVLGRPGFSIADKKRRTGCIGAKHRIGKEEAMRWFQQKYDGII |
YV.L.R.G.S........G.IG..HR..KEEAM.WFQ.K.DG.I | |
Retrocopy | YVHLVRRGYSVTKRRKCRGKIGKSHRVTKEEAMKWFQDKFDGLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 112 .16 RPM |
SRP007412_cerebellum | 0 .05 RPM | 177 .19 RPM |
SRP007412_heart | 0 .00 RPM | 477 .59 RPM |
SRP007412_kidney | 0 .00 RPM | 105 .41 RPM |
SRP007412_liver | 0 .00 RPM | 135 .16 RPM |
SRP007412_testis | 0 .00 RPM | 179 .33 RPM |