RetrogeneDB ID: | retro_etel_1987 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_321924:37264..37993(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000012276 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.35 % |
Parental protein coverage: | 99.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASPSRRLQTKPVITCFKSVLLIYTFVFWITGVVLLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVI |
ASPS.RLQTKPVITCFKSVLLIYTFVFWITGVVLLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVI | |
Retrocopy | ASPSWRLQTKPVITCFKSVLLIYTFVFWITGVVLLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVI |
Parental | ILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNNFKNNYEKALTQYNTTGDYRS |
ILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNNFKNNYEKALTQYNTTGDYRS | |
Retrocopy | ILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNNFKNNYEKALTQYNTTGDYRS |
Parental | DALDKIQNKLHCCGVTKYTDWEDTNYYVQHGYPKSCCKTECTPNKDASKVNHEGCFLKVTTTIESEMGIV |
D.LDKIQNKLHCCGVTKYTDWEDTNYYVQHGYPKSCCKTECTPNKDASKVNHEGCFLKVTTTIESEMGIV | |
Retrocopy | DSLDKIQNKLHCCGVTKYTDWEDTNYYVQHGYPKSCCKTECTPNKDASKVNHEGCFLKVTTTIESEMGIV |
Parental | AGIFFGVACFQLIGIFLAYCLSRAITNNQYEIV |
AG..FGVACFQLIGIFLAYCLSRAITNNQYEIV | |
Retrocopy | AGFSFGVACFQLIGIFLAYCLSRAITNNQYEIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017521 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000004288 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010916 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012276 | 1 retrocopy |
retro_etel_1987 ,
|
Loxodonta africana | ENSLAFG00000027296 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000011370 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007505 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004869 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012481 | 1 retrocopy |