RetrogeneDB ID: | retro_fcat_1111 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:103136854..103137263(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKA2 | ||
Ensembl ID: | ENSFCAG00000022802 | ||
Aliases: | None | ||
Description: | spindle and kinetochore associated complex subunit 2 [Source:HGNC Symbol;Acc:28006] |
Percent Identity: | 65.94 % |
Parental protein coverage: | 95.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LETVFQKADSDLDYIQYRLEYEIKTNHPDTAGKRNPVTLLKELSAIKSRYQTLYARFKPIGIEQKESKNR |
....F.KADSD.DYI.YR.EYEIKTNHP..A.K.NPVTLL.E..AIKS.YQTL.A.FKP....QKE.K.. | |
Retrocopy | MKLMFHKADSDPDYIRYRPEYEIKTNHPESASKKNPVTLLTESLAIKSQYQTLHACFKPLAVGQKETKSC |
Parental | ICATVNKTMTMIQELQKQTDVELSPLTKEEKTAAEQLKSFV-QTYEEVDLQKGILMERRSIPERFKKM |
.CATV.KT.T.IQELQKQTD.ELS..TK..KT.AEQLKS...Q.YEE.DL.K..L.E.RSIPE.F.KM | |
Retrocopy | VCATVLKTTTIIQELQKQTDLELSLWTK-KKTVAEQLKSHM>QSYEEMDLPKRTLVEKRSIPENFRKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .87 RPM |
SRP017611_liver | 0 .00 RPM | 1 .11 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021680 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000029233 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006051 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000010768 | 2 retrocopies | |
Equus caballus | ENSECAG00000015007 | 1 retrocopy | |
Felis catus | ENSFCAG00000022802 | 1 retrocopy |
retro_fcat_1111 ,
|
Homo sapiens | ENSG00000182628 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003405 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010942 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014619 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015241 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020492 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000026072 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000025981 | 3 retrocopies | |
Sorex araneus | ENSSARG00000011128 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024169 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006158 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000017196 | 1 retrocopy |