Parental gene:

SKA2, ENSECAG00000015007

Aliases:None
Description:spindle and kinetochore associated complex subunit 2 [Source:HGNC Symbol;Acc:28006]
Organism:Horse (Equus caballus)
Coordinates:11:33269562..33296365(-)


>ENSECAG00000015007
ATGTTCCAGAAAGCTGACTCTGATCTGGATTACATTCAATACAGGCTGGAATATGAAATCAAGACTAATCATCCTGATTC
AGCAGGCGAGAAAAATCCAGTTACACTCTTAAAGGAATTGTCGGCAATAAAGTCTCGATACCAAACTTTGCAGGCACGCT
TTAAACCAGTTGCTATTGAGCAGAAGGAGACTAAGAGCCGAATTTGTGCTACTTTCAATAAGACTATGGCCATGATACAG
GAACTACAAAAGCAAACAGACCTGGAGCTATCACCACTGACTGAAGAAGAGAAAACTGCAGCCGAGCAATTAAAATCTCA
CATATCAGATTTATGA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 3 .07 RPM
SRP021940_embryo 16 .55 RPM
SRP021940_cerebellum 4 .62 RPM
SRP021940_testis 5 .75 RPM
SRP021940_placental_villous 3 .27 RPM
SRP021940_articular_cartilage 1 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021680 ortholog_one2one 2 retrogenes
retro_btau_310, retro_btau_945,
Canis familiaris ENSCAFG00000029233 ortholog_one2one 1 retrogene
retro_cfam_766,
Cavia porcellus ENSCPOG00000006051 ortholog_one2one 1 retrogene
retro_cpor_542,
Dipodomys ordii ENSDORG00000010768 ortholog_one2one 2 retrogenes
retro_dord_103, retro_dord_281,
Felis catus ENSFCAG00000022802 ortholog_one2one 1 retrogene
retro_fcat_1111,
Homo sapiens ENSG00000182628 ortholog_one2one 1 retrogene
retro_hsap_4214,
Loxodonta africana ENSLAFG00000003405 ortholog_one2one 1 retrogene
retro_lafr_1215,
Myotis lucifugus ENSMLUG00000010942 ortholog_one2many 1 retrogene
retro_mluc_83,
Monodelphis domestica ENSMODG00000014619 ortholog_one2one 1 retrogene
retro_mdom_347,
Mustela putorius furo ENSMPUG00000015241 ortholog_one2one 1 retrogene
retro_mputfur_1435,
Mus musculus ENSMUSG00000020492 ortholog_one2one 2 retrogenes
retro_mmus_370, retro_mmus_778,
Otolemur garnettii ENSOGAG00000026072 ortholog_one2one 4 retrogenes
retro_ogar_1882, retro_ogar_2937, retro_ogar_3032, retro_ogar_907,
Rattus norvegicus ENSRNOG00000025981 ortholog_one2many 3 retrogenes
retro_rnor_1606, retro_rnor_523, retro_rnor_733,
Sorex araneus ENSSARG00000011128 ortholog_one2one 2 retrogenes
retro_sara_60, retro_sara_662,
Ictidomys tridecemlineatus ENSSTOG00000024169 ortholog_one2one 4 retrogenes
retro_itri_1115, retro_itri_1275, retro_itri_1434, retro_itri_725,
Tarsius syrichta ENSTSYG00000006158 ortholog_one2one 3 retrogenes
retro_tsyr_1620, retro_tsyr_2034, retro_tsyr_748,
Tursiops truncatus ENSTTRG00000017196 ortholog_one2one 1 retrogene
retro_ttru_143,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_987 57.27 96.40
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Download FASTA sequences of all ENSECAG00000015007 retrocopies