RetrogeneDB ID: | retro_tsyr_1620 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_513942:162..490(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKA2 | ||
Ensembl ID: | ENSTSYG00000006158 | ||
Aliases: | None | ||
Description: | spindle and kinetochore associated complex subunit 2 [Source:HGNC Symbol;Acc:28006] |
Percent Identity: | 71.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | FQKADSDLDYIQYRLEYEIKTNHPNSAGEK-NPVTLLKELSAIKSRYQTLYAR-FKPVAVEQKETKSRIC |
FQKADSDL.YI.YRLE.EIK..HP.SAG.K.NPVTLLKELS.IKS.YQTLY...F.P.AVEQK.TK..IC | |
Retrocopy | FQKADSDLNYIKYRLECEIKMSHPDSAGKK<NPVTLLKELSVIKS*YQTLYTA<FIPAAVEQKVTKGCIC |
Parental | AAVNKTMDIIQKLQKQTDLELSPLTEEEKTAADQLKSHIPDL |
AAV.KT...I..LQKQT.LELSPLT.E....AD.LKSH.PDL | |
Retrocopy | AAVDKTVNMI*ALQKQTNLELSPLTKEKTLEADELKSHMPDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021680 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000029233 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006051 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000010768 | 2 retrocopies | |
Equus caballus | ENSECAG00000015007 | 1 retrocopy | |
Felis catus | ENSFCAG00000022802 | 1 retrocopy | |
Homo sapiens | ENSG00000182628 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003405 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010942 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014619 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015241 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020492 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000026072 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000025981 | 3 retrocopies | |
Sorex araneus | ENSSARG00000011128 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024169 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000006158 | 3 retrocopies |
retro_tsyr_1620 , retro_tsyr_2034, retro_tsyr_748,
|
Tursiops truncatus | ENSTTRG00000017196 | 1 retrocopy |