RetrogeneDB ID: | retro_fcat_1156 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:211019010..211019496(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RWDD4 | ||
Ensembl ID: | ENSFCAG00000024337 | ||
Aliases: | None | ||
Description: | RWD domain containing 4 [Source:HGNC Symbol;Acc:23750] |
Percent Identity: | 67.26 % |
Parental protein coverage: | 92.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SFRELSPV-SFQYRIGENGDPKAFLIEISWTETYPQTPPIISMNAFFNNT-ISSAVKQSILAKLQEAVEI |
SF..LSPV..FQ.R.GE.GDPK..L.E.SWTET.PQTPP.ISMNAFFNNT.ISS.VKQS.L......... | |
Retrocopy | SFW*LSPV<AFQPRRGEYGDPKTLLMESSWTET*PQTPPMISMNAFFNNT>ISSTVKQSMLSNHRKQWKV |
Parental | HLGTAMTYTLFEYAKDNKEQFMENHHPINSTIPISSIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKT |
.LGT.MTYT......DN.EQFMENHHPI.S..PIS...SIETP.TA...KKKDKKEQL.KAQK.KLADKT | |
Retrocopy | SLGTTMTYT----SLDNEEQFMENHHPIDSPRPISRTVSIETPTTAAAGKKKDKKEQLPKAQKCKLADKT |
Parental | DHKGQLPRGWNWVDVVK-LSKTGSKDDE |
.HKG.LP.GW.WVD.V..L.KT.SKDDE | |
Retrocopy | KHKGDLPQGWDWVDAVRHLGKTDSKDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 19 .51 RPM |
SRP017611_kidney | 0 .00 RPM | 34 .11 RPM |
SRP017611_liver | 0 .00 RPM | 31 .94 RPM |