RetrogeneDB ID: | retro_hsap_3841 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:39894095..39894551(-) | ||
Located in intron of: | ENSG00000237251 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000175741 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RWDD4 | ||
Ensembl ID: | ENSG00000182552 | ||
Aliases: | RWDD4, FAM28A, RWDD4A | ||
Description: | RWD domain containing 4 [Source:HGNC Symbol;Acc:23750] |
Percent Identity: | 99.34 % |
Parental protein coverage: | 80.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GENGDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKD |
GENGDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEA.EANLGTAMTYTLFEYAKD | |
Retrocopy | GENGDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEAAEANLGTAMTYTLFEYAKD |
Parental | NKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVV |
NKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVV | |
Retrocopy | NKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVV |
Parental | KHLSKTGSKDDE |
KHLSKTGSKDDE | |
Retrocopy | KHLSKTGSKDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .44 RPM | 7 .35 RPM |
bodymap2_adrenal | 0 .80 RPM | 7 .80 RPM |
bodymap2_brain | 0 .26 RPM | 5 .65 RPM |
bodymap2_breast | 0 .80 RPM | 10 .82 RPM |
bodymap2_colon | 1 .24 RPM | 11 .89 RPM |
bodymap2_heart | 0 .24 RPM | 12 .28 RPM |
bodymap2_kidney | 1 .68 RPM | 17 .76 RPM |
bodymap2_liver | 0 .47 RPM | 7 .03 RPM |
bodymap2_lung | 0 .62 RPM | 10 .16 RPM |
bodymap2_lymph_node | 0 .27 RPM | 9 .72 RPM |
bodymap2_ovary | 1 .70 RPM | 23 .83 RPM |
bodymap2_prostate | 0 .61 RPM | 12 .78 RPM |
bodymap2_skeletal_muscle | 0 .62 RPM | 16 .81 RPM |
bodymap2_testis | 0 .98 RPM | 13 .61 RPM |
bodymap2_thyroid | 1 .56 RPM | 17 .74 RPM |
bodymap2_white_blood_cells | 1 .06 RPM | 10 .24 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 2 .27 RPM |
CEU_NA11843 | 2 .16 RPM |
CEU_NA11930 | 1 .83 RPM |
CEU_NA12004 | 3 .08 RPM |
CEU_NA12400 | 1 .33 RPM |
CEU_NA12751 | 1 .70 RPM |
CEU_NA12760 | 1 .39 RPM |
CEU_NA12827 | 2 .97 RPM |
CEU_NA12872 | 2 .61 RPM |
CEU_NA12873 | 2 .30 RPM |
FIN_HG00183 | 2 .61 RPM |
FIN_HG00277 | 2 .88 RPM |
FIN_HG00315 | 2 .95 RPM |
FIN_HG00321 | 2 .93 RPM |
FIN_HG00328 | 2 .56 RPM |
FIN_HG00338 | 2 .70 RPM |
FIN_HG00349 | 3 .53 RPM |
FIN_HG00375 | 2 .67 RPM |
FIN_HG00377 | 2 .57 RPM |
FIN_HG00378 | 2 .74 RPM |
GBR_HG00099 | 2 .88 RPM |
GBR_HG00111 | 2 .51 RPM |
GBR_HG00114 | 2 .34 RPM |
GBR_HG00119 | 2 .59 RPM |
GBR_HG00131 | 2 .53 RPM |
GBR_HG00133 | 2 .22 RPM |
GBR_HG00134 | 2 .34 RPM |
GBR_HG00137 | 2 .06 RPM |
GBR_HG00142 | 2 .36 RPM |
GBR_HG00143 | 3 .29 RPM |
TSI_NA20512 | 3 .28 RPM |
TSI_NA20513 | 3 .65 RPM |
TSI_NA20518 | 3 .75 RPM |
TSI_NA20532 | 1 .90 RPM |
TSI_NA20538 | 3 .46 RPM |
TSI_NA20756 | 2 .76 RPM |
TSI_NA20765 | 2 .49 RPM |
TSI_NA20771 | 2 .33 RPM |
TSI_NA20786 | 2 .28 RPM |
TSI_NA20798 | 3 .52 RPM |
YRI_NA18870 | 1 .62 RPM |
YRI_NA18907 | 2 .36 RPM |
YRI_NA18916 | 2 .40 RPM |
YRI_NA19093 | 1 .59 RPM |
YRI_NA19099 | 1 .92 RPM |
YRI_NA19114 | 2 .15 RPM |
YRI_NA19118 | 2 .13 RPM |
YRI_NA19213 | 2 .37 RPM |
YRI_NA19214 | 2 .09 RPM |
YRI_NA19223 | 2 .27 RPM |