RetrogeneDB ID: | retro_sscr_1019 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 9:10014644..10015147(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RWDD4 | ||
Ensembl ID: | ENSSSCG00000015776 | ||
Aliases: | None | ||
Description: | RWD domain containing 4 [Source:HGNC Symbol;Acc:23750] |
Percent Identity: | 59.32 % |
Parental protein coverage: | 90.05 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MSANEDQEMELEALRSIYEGD-ESFRELSPVSF-QYRIGENGDPKAFLIEISWTETYPQTPPIISMNAFF |
..A..D.E...E....I.EGD.E.F.ELSPVSF.....GE.GDPKAF..E.S.T.TYPQ..PI.SMNA.F | |
Retrocopy | LGAKKDKEVGREVWHCIEEGD>ERF*ELSPVSF<SIGVGESGDPKAFFLELSGTDTYPQPLPISSMNASF |
Parental | NNTISSAV-KQSILAKLQEAVEVNLGTAMTYTLFEYAKDNK-EQFMENHHPIHSAVSQTSISNIISTEAP |
.NT..SAV..QS..AKL.EAVEVNL..AMTYTL.EY.KD.K.EQFMEN.HP..S.....SIS.IIS...P | |
Retrocopy | -NTVLSAV<QQSTEAKL*EAVEVNLRPAMTYTLSEYTKDKK<EQFMENYHPVNS---MSSISKIISV*IP |
Parental | NTAPSSKK-KDKKEQLSKAQKRKLADKTDHKGELPRG |
NTAP.SKK.KD.KE.LSK.QK.K.A.KT.....L..G | |
Retrocopy | NTAPLSKK>KDRKERLSKGQKHKAASKTSSRMDLVDG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 11 .81 RPM |
SRP014902_testis | 0 .00 RPM | 9 .19 RPM |
SRP018288_heart | 0 .00 RPM | 20 .48 RPM |
SRP018288_kidney | 0 .00 RPM | 24 .82 RPM |
SRP018288_liver | 0 .00 RPM | 11 .67 RPM |
SRP018288_lung | 0 .00 RPM | 14 .87 RPM |
SRP018856_adipose | 0 .00 RPM | 14 .49 RPM |
SRP035408_brain | 0 .00 RPM | 2 .60 RPM |
SRP035408_liver | 0 .00 RPM | 7 .02 RPM |