RetrogeneDB ID:

retro_ggor_2536

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:102860511..102860871(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RWDD4
Ensembl ID:ENSGGOG00000011982
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2536
AACAACACCGTATCATCAGCTGTAAAGCAGAGTATATTAGCCAAGTTACAGGAAGCAGTAGAAGCTAATCTTGGAACCGC
TATGACCTATACATTGTTTGAATATGCCAAAGACAATAAAAAGCAGTTCATGGAGAATCACAATCCCATTAATTCCACAA
CATCGATAAGCAATATCATCTCAATTGAAACTCCTAATACAGCCCCATCAAGTAAGAAAAAAGACAAAAAAGAATAACTT
TCAAAAGCCCAGAAGCATAAGCTGGCAGACAAAACAGATCACAAAGGAGAACTTCCTCGAGGCTGGAACTGGGTTGATGT
TGTGAAGCATTTAAGCAAAACTGACTCTAAGGATGATGAG

ORF - retro_ggor_2536 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 95. %
Parental protein coverage: 63.83 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPS
NNT.SSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNK.QFMENHNPINS.TSISNIISIETPNTAPS
RetrocopyNNTVSSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKKQFMENHNPINSTTSISNIISIETPNTAPS
ParentalSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLSKTGSKDDE
SKKKDKKE.LSKAQK.KLADKTDHKGELPRGWNWVDVVKHLSKT.SKDDE
RetrocopySKKKDKKE*LSKAQKHKLADKTDHKGELPRGWNWVDVVKHLSKTDSKDDE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .14 RPM 5 .71 RPM
SRP007412_cerebellum 0 .04 RPM 8 .47 RPM
SRP007412_heart 0 .06 RPM 3 .88 RPM
SRP007412_kidney 0 .41 RPM 26 .54 RPM
SRP007412_liver 0 .26 RPM 14 .16 RPM
SRP007412_testis 1 .24 RPM 31 .18 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2536 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2536 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3770
Pan troglodytes retro_ptro_2556

Parental genes homology:
Parental genes homology involve 20 parental genes, and 30 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000030811 retrocopy
Canis familiaris ENSCAFG000000078801 retrocopy
Choloepus hoffmanni ENSCHOG000000052903 retrocopies
Dasypus novemcinctus ENSDNOG000000151321 retrocopy
Felis catus ENSFCAG000000243371 retrocopy
Homo sapiens ENSG000001825522 retrocopies
Gorilla gorilla ENSGGOG00000011982 1 retrocopy
retro_ggor_2536 ,
Myotis lucifugus ENSMLUG000000068001 retrocopy
Monodelphis domestica ENSMODG000000042232 retrocopies
Nomascus leucogenys ENSNLEG000000107331 retrocopy
Otolemur garnettii ENSOGAG000000167095 retrocopies
Ochotona princeps ENSOPRG000000151471 retrocopy
Pongo abelii ENSPPYG000000152301 retrocopy
Pan troglodytes ENSPTRG000000166322 retrocopies
Rattus norvegicus ENSRNOG000000225001 retrocopy
Sarcophilus harrisii ENSSHAG000000119711 retrocopy
Sus scrofa ENSSSCG000000157762 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000130861 retrocopy
Tarsius syrichta ENSTSYG000000065991 retrocopy
Vicugna pacos ENSVPAG000000057431 retrocopy



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