RetrogeneDB ID: | retro_rnor_2930 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:64448265..64448830(-) | ||
Located in intron of: | ENSRNOG00000046918 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rwdd4 | ||
Ensembl ID: | ENSRNOG00000022500 | ||
Aliases: | None | ||
Description: | RWD domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q569B7] |
Percent Identity: | 89.53 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MGANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGEDGDPKAFLIEISWTETY-PQTPPVISMNAFFN |
MGANEDQE.ELEAL.SIYEGD.SFRELSPVSFQYRIGED.DPKAFLIEISWTET..PQTPPVISMNAFFN | |
Retrocopy | MGANEDQETELEAL*SIYEGD*SFRELSPVSFQYRIGEDSDPKAFLIEISWTETH>PQTPPVISMNAFFN |
Parental | NTISSAVKQSILAKLQEAVEVNLGT-AMTYTLFEYAKDNKEQFMENHHPGSSTTPIANIISVETPSAAPS |
NTIS.AVKQSILAKLQEA.EV.LGT.AMTYTLFEYAKDNKE.FMENHHPGSSTTPIANIISVETPS..PS | |
Retrocopy | NTISLAVKQSILAKLQEAREVDLGT<AMTYTLFEYAKDNKEEFMENHHPGSSTTPIANIISVETPSTGPS |
Parental | SK-KKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLSKSGSKDDE |
SK.KKD.KEQLSK.QK.K.AD.TDHKGEL.RGWNWVDVVKHLSKSGSKDDE | |
Retrocopy | SK>KKDRKEQLSKVQKCKPADQTDHKGELSRGWNWVDVVKHLSKSGSKDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .07 RPM |
SRP017611_liver | 0 .00 RPM | 9 .14 RPM |