RetrogeneDB ID: | retro_fcat_1465 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:94984841..94985256(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000025763 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.71 % |
Parental protein coverage: | 88.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | QLDADRYENDPELEKIRKERNYSWMDIITICKDKLPDYEEKIKMFYKEHLHLDDEIRYILDGSGYFDVRD |
.L.AD.Y.N.PE...I.KERNY.W.DI.TICKDKLP..EEK.K.FYKEHL.L.DEI.YILDGS.YFDVRD | |
Retrocopy | KLVADIYKNYPE*QNIQKERNYYWIDI-TICKDKLPNNEEKMKIFYKEHLYLNDEICYILDGSEYFDVRD |
Parental | KEDKWVRIFMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTAYNRPADHFE-VRGQYVEFLAQT |
KEDKW..IFMEKGDMITLP.GIYH..TLDEKN.VK...L.VGEPVWTAYN...D.FE...GQY...LAQ. | |
Retrocopy | KEDKWIHIFMEKGDMITLPVGIYHHSTLDEKN*VKVLCLIVGEPVWTAYNWLVDEFE>LEGQYMKVLAQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 129 .85 RPM |
SRP017611_liver | 0 .00 RPM | 63 .38 RPM |