RetrogeneDB ID: | retro_cfam_603 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 14:37409809..37410178(+) | ||
Located in intron of: | ENSCAFG00000002795 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000003257 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.8 % |
Parental protein coverage: | 88.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NDPELEKIRKERNYSWMDIITISKDKLPNYEEKLRMFYEEHLHVDEEIRYILDGSGYFDVRDKDEKWIRI |
ND.ELEKI..ERNYS..DIITI..DKLPNYEEK..MFYEEHLH...EI.YILD.SGYFDVRDK...WIRI | |
Retrocopy | NDLELEKI*RERNYS*IDIITICEDKLPNYEEKIKMFYEEHLHLYDEIWYILDSSGYFDVRDKEYQWIRI |
Parental | FMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGQPVWTAYNRPADHLEARGQ |
FMEKG.MI.LPA.IYH.FTL.EKNYVKA..LFVG.PV...YN.PADH.EARG. | |
Retrocopy | FMEKGNMISLPAWIYHCFTLEEKNYVKAIGLFVGEPVCMVYNWPADHCEARGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |