RetrogeneDB ID: | retro_cfam_554 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:46346854..46347209(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000003257 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.98 % |
Parental protein coverage: | 85.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LDADKHENDPELEKIRKERNYSWMDIITISKDKLPNYEEKLR-MFYEEHLHVDEEIRYILDGSGYFDVRD |
L.A.K.E.DPELE.I.KERNY.WMDIITI.K.K.P..EEK......EEHLH.D.EI.Y.....G.FDVRD | |
Retrocopy | LGANK*EHDPELERIQKERNYFWMDIITICKGK*PDHEEKMM<VRKEEHLHPDDEIWYVWHSRGSFDVRD |
Parental | KDEKWIRIFME-KGDMITLPAGIYHRFTLDEKNYVKAMRLFVGQPVWTAYN |
K..K.I.IF.E.KGDMIT.PA.I.H.F...EKN..KA.RLF.G..VWTAYN | |
Retrocopy | KEDK*IHIFKE<KGDMITFPARIHHCFSPEEKNCAKAPRLFMGEVVWTAYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |