Parental gene:

ENSCAFG00000003257

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:AAEX03024506.1:461..5809(+)


>ENSCAFG00000003257
TTGGATGCTGACAAACATGAGAATGATCCAGAATTAGAAAAGATCCGGAAAGAGAGAAACTACTCCTGGATGGACATAAT
AACCATAAGCAAGGATAAACTACCAAATTATGAAGAAAAGCTCAGGATGTTCTACGAGGAGCACCTGCACGTGGATGAGG
AGATCCGCTACATCTTGGACGGCAGCGGGTACTTCGATGTGCGAGACAAAGACGAGAAGTGGATCCGCATTTTCATGGAA
AAGGGAGACATGATCACTCTCCCTGCAGGGATTTATCACCGCTTCACGCTGGACGAAAAGAACTACGTGAAGGCCATGCG
GCTGTTCGTGGGGCAACCCGTGTGGACGGCGTACAACCGGCCCGCCGACCACCTGGAGGCCCGGGGCCAGTACGTGCGGT
TCCTGGCGCAGACCGCCTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 0 .00 RPM
SRP017611_brain 0 .00 RPM
SRP017611_kidney 0 .00 RPM
SRP017611_liver 0 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018432 ortholog_many2many 2 retrogenes
retro_amel_1306, retro_amel_1350,
Choloepus hoffmanni ENSCHOG00000010496 ortholog_one2many 8 retrogenes
retro_chof_1146, retro_chof_1212, retro_chof_1800, retro_chof_2067, retro_chof_2163, retro_chof_401, retro_chof_742, retro_chof_748,
Dasypus novemcinctus ENSDNOG00000007523 ortholog_one2many 3 retrogenes
retro_dnov_181, retro_dnov_1891, retro_dnov_2106,
Equus caballus ENSECAG00000005765 ortholog_one2many 1 retrogene
retro_ecab_870,
Echinops telfairi ENSETEG00000015860 ortholog_one2many 1 retrogene
retro_etel_1732,
Felis catus ENSFCAG00000025763 ortholog_many2many 2 retrogenes
retro_fcat_1465, retro_fcat_882,
Homo sapiens ENSG00000182551 ortholog_one2many 2 retrogenes
retro_hsap_165, retro_hsap_2427,
Gorilla gorilla ENSGGOG00000034855 ortholog_one2many 2 retrogenes
retro_ggor_1510, retro_ggor_250,
Loxodonta africana ENSLAFG00000004902 ortholog_one2many 1 retrogene
retro_lafr_173,
Macaca mulatta ENSMMUG00000019471 ortholog_one2many 1 retrogene
retro_mmul_622,
Monodelphis domestica ENSMODG00000014484 ortholog_one2many 2 retrogenes
retro_mdom_1128, retro_mdom_723,
Nomascus leucogenys ENSNLEG00000007518 ortholog_one2many 2 retrogenes
retro_nleu_1559, retro_nleu_237,
Oryctolagus cuniculus ENSOCUG00000000530 ortholog_one2many 1 retrogene
retro_ocun_1236,
Otolemur garnettii ENSOGAG00000007668 ortholog_one2many 2 retrogenes
retro_ogar_2871, retro_ogar_535,
Pongo abelii ENSPPYG00000012683 ortholog_one2many 2 retrogenes
retro_pabe_1789, retro_pabe_463,
Pan troglodytes ENSPTRG00000011624 ortholog_one2many 2 retrogenes
retro_ptro_1400, retro_ptro_157,
Pteropus vampyrus ENSPVAG00000003660 ortholog_one2many 1 retrogene
retro_pvam_689,
Rattus norvegicus ENSRNOG00000008950 ortholog_one2many 1 retrogene
retro_rnor_1316,
Tarsius syrichta ENSTSYG00000004138 ortholog_one2many 1 retrogene
retro_tsyr_1271,
Tursiops truncatus ENSTTRG00000005942 ortholog_one2many 2 retrogenes
retro_ttru_1485, retro_ttru_1562,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_554 61.98 85.61
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2. retro_cfam_603 74.80 88.49
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3. retro_cfam_1764 61.61 79.86
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Download FASTA sequences of all ENSCAFG00000003257 retrocopies