RetrogeneDB ID: | retro_fcat_213 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:156859..157503(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLEKHB2 | ||
Ensembl ID: | ENSFCAG00000027063 | ||
Aliases: | None | ||
Description: | pleckstrin homology domain containing, family B (evectins) member 2 [Source:HGNC Symbol;Acc:19236] |
Percent Identity: | 65.02 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAFVKSGWLLRQSTILKRWKKNWFDLWSDG-HLIYYDDQTRQSVEDKVHMPVDCINIRMGHECRDIQPPD |
M.FVKSGWLLRQSTILK.W.KNWFDLWSD...LIYYD..T.QSVEDKVHMPVD.INI.MGHEC.D.QPPD | |
Retrocopy | MVFVKSGWLLRQSTILKHWEKNWFDLWSDV<YLIYYDN*TWQSVEDKVHMPVDFINICMGHECQDTQPPD |
Parental | GKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRTNTAYVGSEVLYDETAVASSPPPYTAYAAPT |
GK.KDC.L.IVC.DGKT..LCAEST.DCLAWKFTLQDSRTNTAYVGSE.LYD.TAV.SS.PP.TAY..PT | |
Retrocopy | GKPKDCTLKIVC*DGKTMHLCAESTEDCLAWKFTLQDSRTNTAYVGSEILYDKTAVTSSSPPHTAYGTPT |
Parental | PEQAYGYGPYSGAYPPGTQVVYAASGQAYAVPYQYPYAGLYGQQPANQIIIRERYRDSDSDLALGMLAGA |
.E.AYGYGPYSGA.PPGTQ..Y......Y..P....Y......Q.......R....D...D.......G. | |
Retrocopy | SE-AYGYGPYSGA*PPGTQAIYCSVSCQY--PHEGLYGQQPANQVIIREWYRDSDSDLALDMVARAATGM |
Parental | ATGMALGSLFWVF |
A.G....SL.WVF | |
Retrocopy | ALG----SLVWVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 36 .96 RPM |
SRP017611_kidney | 0 .10 RPM | 21 .54 RPM |
SRP017611_liver | 0 .00 RPM | 5 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000941 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000026329 | 1 retrocopy | |
Equus caballus | ENSECAG00000017331 | 1 retrocopy | |
Felis catus | ENSFCAG00000027063 | 1 retrocopy |
retro_fcat_213 ,
|
Homo sapiens | ENSG00000115762 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000001052 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018634 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010698 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024282 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028408 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012740 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020509 | 1 retrocopy |