RetrogeneDB ID: | retro_hsap_1890 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:57597140..57597586(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000267066 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLEKHB2 | ||
Ensembl ID: | ENSG00000115762 | ||
Aliases: | PLEKHB2, EVT2 | ||
Description: | pleckstrin homology domain containing, family B (evectins) member 2 [Source:HGNC Symbol;Acc:19236] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 67.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KDCMLQIVCRDGKTISLCAEST-DDCLAWKFTLQDSRTNTAYVGSAVMTDETSVVSSPPPYTAYAAPAPE |
KDCMLQIVC.DGKTISLCAE.T..DCLAWKFTLQDSRTNTAYVGS.VMTDET.VVSSPPP.TAYAAPA.E | |
Retrocopy | KDCMLQIVCSDGKTISLCAENT<SDCLAWKFTLQDSRTNTAYVGSTVMTDETPVVSSPPPHTAYAAPATE |
Parental | AYGYGPYGGAYPPGTQVVYAANGQAYAVPYQYPYAGLYGQQPANQVIIRERYRDNDSDLALGMLAGAATG |
..GY.PY.G...PGTQ.VYAANGQAYAVPYQY.YAGLYGQQPANQVII.E.YRDNDSDLA.GMLAG.A.. | |
Retrocopy | E*GYEPYSGVCLPGTQIVYAANGQAYAVPYQYSYAGLYGQQPANQVIIQE*YRDNDSDLAVGMLAGVAIV |
Parental | MALGSLFWVF |
M.LGSLF.VF | |
Retrocopy | MPLGSLFLVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 81 .22 RPM |
bodymap2_adrenal | 0 .00 RPM | 75 .39 RPM |
bodymap2_brain | 0 .00 RPM | 230 .49 RPM |
bodymap2_breast | 0 .00 RPM | 66 .60 RPM |
bodymap2_colon | 0 .00 RPM | 74 .91 RPM |
bodymap2_heart | 0 .00 RPM | 63 .28 RPM |
bodymap2_kidney | 0 .00 RPM | 224 .98 RPM |
bodymap2_liver | 0 .00 RPM | 22 .94 RPM |
bodymap2_lung | 0 .00 RPM | 133 .02 RPM |
bodymap2_lymph_node | 0 .00 RPM | 90 .91 RPM |
bodymap2_ovary | 0 .00 RPM | 56 .06 RPM |
bodymap2_prostate | 0 .00 RPM | 69 .89 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 28 .26 RPM |
bodymap2_testis | 0 .00 RPM | 112 .18 RPM |
bodymap2_thyroid | 0 .00 RPM | 120 .26 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 228 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1570 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000000941 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000026329 | 1 retrocopy | |
Equus caballus | ENSECAG00000017331 | 1 retrocopy | |
Felis catus | ENSFCAG00000027063 | 1 retrocopy | |
Homo sapiens | ENSG00000115762 | 1 retrocopy |
retro_hsap_1890 ,
|
Meleagris gallopavo | ENSMGAG00000001052 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018634 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010698 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024282 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028408 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012740 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020509 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |