RetrogeneDB ID: retro_fcat_751

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:34237550..34237778(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000026097
• Aliases: None
• Description: None

Sequence

>retro_fcat_751
ATGGGAGTGCAGGAGGAGACCATCTCCCCTGGAGGTGGGTGAACCTTGTCCAAGCATGGTCAGACGTATGTGGTGTACTA
CCCAGTGATACTTGAAGATGGAAAAAAATTGTATTCTTCCCAGGATAGAAACAATCCCTTGACATTTATGCTAGGCATGT
AGGAGGTGATCCGAGGTTGGGAAGAAAGGATTGCCCAGGTGAGTGTGGGTCAGAGAGTAAAATTGTCT

Alignment

ORF - retro_fcat_751 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.42 %
• Parental protein coverage: 70.37 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG
          MGVQ.ETISPG.G.T..K.GQT.VV.Y...LEDGKK..SS.DRN.P..FMLG..EVIRGWEE..AQ.SVG
Retrocopy MGVQEETISPGGG*TLSKHGQTYVVYYPVILEDGKKLYSSQDRNNPLTFMLGM*EVIRGWEERIAQVSVG

Parental  QRAKLT
          QR.KL.
Retrocopy QRVKLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.11 RPM	324.00 RPM
SRP017611_kidney	0.00 RPM	126.86 RPM
SRP017611_liver	0.10 RPM	37.30 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_751 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_751 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000008303	4 retrocopies	retro_btau_1220, retro_btau_1265, retro_btau_128, retro_btau_1760,
Ciona savignyi	ENSCSAVG00000006859	1 retrocopy	retro_csav_11,
Echinops telfairi	ENSETEG00000007454	1 retrocopy	retro_etel_2059,
Felis catus	ENSFCAG00000026097	2 retrocopies	retro_fcat_168, retro_fcat_751 ,
Felis catus	ENSFCAG00000027304	1 retrocopy	retro_fcat_1894,
Homo sapiens	ENSG00000088832	1 retrocopy	retro_hsap_1198,
Gorilla gorilla	ENSGGOG00000001729	3 retrocopies	retro_ggor_1494, retro_ggor_2344, retro_ggor_933,
Macaca mulatta	ENSMMUG00000015996	1 retrocopy	retro_mmul_10,
Monodelphis domestica	ENSMODG00000019554	2 retrocopies	retro_mdom_151, retro_mdom_733,
Mustela putorius furo	ENSMPUG00000017946	1 retrocopy	retro_mputfur_1649,
Pteropus vampyrus	ENSPVAG00000013840	1 retrocopy	retro_pvam_1367,
Sus scrofa	ENSSSCG00000007188	1 retrocopy	retro_sscr_98,
Tursiops truncatus	ENSTTRG00000003547	3 retrocopies	retro_ttru_1227, retro_ttru_802, retro_ttru_904,
Vicugna pacos	ENSVPAG00000011511	1 retrocopy	retro_vpac_171,