RetrogeneDB ID:

retro_fcat_9

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:E1:19929198..19929591(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFCAG00000028860
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS15A
Ensembl ID:ENSFCAG00000010625
Aliases:None
Description:ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]


Retrocopy-Parental alignment summary:






>retro_fcat_9
ATGGTGAGCATGAATGTCCTGGCAGATCCTCTCAAGAGCATTAACAATGCTGAAAAGAGAGGCAAACGCCAGGTTCTTAT
TAGGCCATGCTCCAAAGTCATTGTCCGATTTCTGACTGTGATGATGAAGCATGGTTACATTGGCGAATCTGAAATCATCG
ATGATCACAGAGCTGGGAAAATTGTTGCGAACCTCACAGGCAGATTAAACAAGTGTGGAGTGATCAGCCCCAGGTTTGAT
GTACAACTCAAAGATCTAGAAAAATGGCAGAATAATCTGCTCCCATCCCGCCAGTTTGGTTTCATTGTGCTGACAACCTC
AGCTGGCATCATGGACCATGAAGAAGTAAGACAAAAACACACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

ORF - retro_fcat_9 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.66 %
Parental protein coverage: 97.76 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHVGYIGEFEIIDDHRAGKIVVNLTGRL
MV.MNVLAD.LKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKH.GYIGE.EIIDDHRAGKIV.NLTGRL
RetrocopyMVSMNVLADPLKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKH-GYIGESEIIDDHRAGKIVANLTGRL
ParentalNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF
NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEE.R.KHTGGKILGFFF
RetrocopyNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEVRQKHTGGKILGFFF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 3 .56 RPM 37 .65 RPM
SRP017611_kidney 17 .62 RPM 191 .17 RPM
SRP017611_liver 11 .02 RPM 117 .37 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_9 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_9 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 150 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000207335 retrocopies
Callithrix jacchus ENSCJAG000000200716 retrocopies
Felis catus ENSFCAG00000010625 11 retrocopies
Gadus morhua ENSGMOG000000058621 retrocopy
Latimeria chalumnae ENSLACG000000114761 retrocopy
Loxodonta africana ENSLAFG0000002699613 retrocopies
Mustela putorius furoENSMPUG0000001342412 retrocopies
Mus musculus ENSMUSG0000000868329 retrocopies
Otolemur garnettii ENSOGAG0000001319914 retrocopies
Procavia capensis ENSPCAG000000029345 retrocopies
Pan troglodytes ENSPTRG000000078232 retrocopies
Sarcophilus harrisii ENSSHAG000000172936 retrocopies
Tarsius syrichta ENSTSYG0000000762745 retrocopies



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