RetrogeneDB ID: | retro_fcat_9 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:19929198..19929591(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000028860 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSFCAG00000010625 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 94.66 % |
Parental protein coverage: | 97.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHVGYIGEFEIIDDHRAGKIVVNLTGRL |
MV.MNVLAD.LKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKH.GYIGE.EIIDDHRAGKIV.NLTGRL | |
Retrocopy | MVSMNVLADPLKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKH-GYIGESEIIDDHRAGKIVANLTGRL |
Parental | NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEE.R.KHTGGKILGFFF | |
Retrocopy | NKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEVRQKHTGGKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .56 RPM | 37 .65 RPM |
SRP017611_kidney | 17 .62 RPM | 191 .17 RPM |
SRP017611_liver | 11 .02 RPM | 117 .37 RPM |